CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX78982
CDX81826
CDX84083
CDX87098
CDX89953
CDY02479
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY26139
CDY26245
CDY31444
CDY44660
CDY48302
CDY56625
CDY60273
CDY67613
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10070.1	CDX89953	AT1G02680.1	17340043
AT3G10070.1	CDY15256	AT1G02680.1	17340043
AT3G10070.1	CDY15437	AT1G02680.1	17340043
AT3G10070.1	CDY71056	AT1G02680.1	17340043
AT3G10070.1	CDX81826	AT1G17440.1	17340043
AT3G10070.1	CDY21749	AT1G17440.1	17340043
AT3G10070.1	CDY26245	AT1G17440.1	17340043
AT3G10070.1	CDY48302	AT1G17440.1	17340043
AT3G10070.1	CDY03944	AT1G27720.1	17340043
AT3G10070.1	CDY60273	AT1G27720.1	17340043
AT3G10070.1	CDX84083	AT1G32750.1	17340043
AT3G10070.1	CDY44660	AT1G32750.1	17340043
AT3G10070.1	CDY02479	AT1G54140.1	17340043
AT3G10070.1	CDY26139	AT1G54140.1	17340043
AT3G10070.1	CDY56625	AT1G54140.1	17340043
AT3G10070.1	CDX78982	AT4G20280.1	17340043
AT3G10070.1	CDY31444	AT4G20280.1	17340043
AT3G10070.1	CDY67613	AT4G20280.1	17340043
AT3G10070.1	CDX75423	AT4G34340.1	17340043
AT3G10070.1	CDY69783	AT4G34340.1	17340043
AT3G10070.1	CDX87098	AT5G25150.1	17340043
AT3G10070.1	CDY05378	AT5G25150.1	17340043
AT3G10070.1	CDY05473	AT5G25150.1	17340043
AT3G10070.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034092.1-P	Field mustard	plastid	40.0	51.3
CDY22214	Canola	plastid	38.84	39.3
CDY00904	Canola	nucleus, plastid	51.88	33.97
AT3G10070.1	Thale cress	nucleus, plastid	52.46	33.58
CDY60164	Canola	nucleus, plastid	50.14	32.83
VIT_08s0007g03700.t01	Wine grape	nucleus	33.91	31.45
Os01t0858500-01	Rice	plastid	24.35	27.91
GSMUA_Achr10P...	Banana	plastid	23.19	22.47
KRH30849	Soybean	nucleus, plastid	32.17	21.89
KRH32724	Soybean	nucleus, plastid	29.57	20.12
PGSC0003DMT400023148	Potato	nucleus, plastid	32.46	19.96
Solyc09g009680.2.1	Tomato	nucleus, plastid	31.59	19.26
Zm00001d042792_P002	Maize	nucleus, plastid	26.09	18.29
TraesCS3D01G364400.1	Wheat	cytosol, plastid	28.7	18.1
TraesCS3A01G371300.1	Wheat	nucleus, plastid	28.41	17.69
TraesCS3B01G403500.1	Wheat	nucleus	27.54	17.37
EES03919	Sorghum	nucleus, plastid	24.93	17.27
HORVU3Hr1G084430.4	Barley	plastid	27.25	17.25
CDX81826	Canola	plastid	17.1	10.97
CDY26245	Canola	plastid	20.58	10.91
CDY21749	Canola	plastid	17.1	10.54
CDY48302	Canola	plastid	16.23	9.46

Protein Annotations

MapMan:15.3.4.3.5	GO:A0A078HRS7	UniProt:A0A078HRS7	EnsemblPlants:CDY41320	ProteinID:CDY41320	ProteinID:CDY41320.1
GO:GO:0000124	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005669	GO:GO:0006139	GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046695	EnsemblPlantsGene:GSBRNA2T00072869001	PFAM:PD012998	PANTHER:PTHR12264	PANTHER:PTHR12264:SF21
InterPro:TAF12	InterPro:TFIID_TAF12_dom	UniParc:UPI0004EE9989	SEG:seg	:	:

Description

BnaA01g31990DBnaA01g31990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRS7]

Coordinates

chrLK032495:-:83929..86516

Molecular Weight (calculated)

37880.2 Da

IEP (calculated)

11.402

GRAVY (calculated)

-0.698

Length

345 amino acids

Sequence
(BLAST)

001: MDQPRQISPA SQPPETPSQA SKPAVVWRLA FHLPQFRAPL SLRLLFSRDL LGSNTAGRVV EQSGYQKLHP IQVSRSLMRP SSIGSPGVQS NGAAQQSLHA
101: TNQPWLSCSA QGKQPLAPPS YRPLVNKTSM QPISHVPQQH LSTSPATSQP QQQHQSEGQL QQKPLPHPHQ PARVQGPVSQ KGTSPAMLTQ PPVSQPGNQA
201: KTVSSENEVS DNRILGKRNI HELLQQIDPS ENWIQRLKPP LPILRKTFWS QSQLLASDTL RTSCSMLVKR NWNIRPPGFS SDEIKAFRKP LTTDIHKERL
301: AAIKKSVTVM EAGNARNPYG HGMANARGGQ AKTPANPLGS TTFNH

Best Arabidopsis Sequence Match ( AT3G10070.1 )
(BLAST)

001: MDQPRQSSTA SQPPETPPQP SDSKPSTLTQ IQPTPSTNPS PSSVVSSIPS SPAPQSPSLN PNPNPPQYTR PVTSPATQQQ QHLSQPLVRP PPQAYSRPWQ
101: QHSSYTHFSS ASSPLLSSSS APASSSSSLP ISGQQRGGMA IGVPASPIPS PSPTPSQHSP SAFPGSFGQQ YGGLGRGTVG MSEATSNTSS PQVRMMQGTQ
201: GIGMMGTLGS GSQIRPSGMT QHQQRPTQSS LRPASSTSTQ SPVAQNFQGH SLMRPSPISS PNVQSTGASQ QSLQAINQPW LSSTPQGKPP LPPPSYRPQV
301: NSPSMQQRPH IPQQHISTSA ATPQPQQQQS QQQHQPQEQL QQLRSPQQPL AHPHQPTRVQ GLVNQKVTSP VMPSQPPVAQ PGNHAKTVSA ETEPSDDRIL
401: GKRSIHELLQ QIDPSEKLDP EVEDILSDIA EDFVESITTF GCSLAKHRKS DILEAKDILL HVERNWNIRP PGFSSDEFKT FRKPLTTDIH KERLAAIKKS
501: VTATEAANAR NQFGHGTANA RGGQAKTPSN PMGSTTFNH

Arabidopsis Description

TAF12Transcription initiation factor TFIID subunit 12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SR71]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.