CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75423
CDX81826
CDX87098
CDX89953
CDY00904
CDY03944
CDY05378
CDY05473
CDY15256
CDY15437
CDY19814
CDY21749
CDY22214
CDY26245
CDY41320
CDY48302
CDY60164
CDY60273
CDY69783
CDY71056

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	CDX89953	AT1G02680.1	17340043
AT4G34340.1	CDY15256	AT1G02680.1	17340043
AT4G34340.1	CDY15437	AT1G02680.1	17340043
AT4G34340.1	CDY71056	AT1G02680.1	17340043
AT4G34340.1	CDX81826	AT1G17440.1	17340043
AT4G34340.1	CDY21749	AT1G17440.1	17340043
AT4G34340.1	CDY26245	AT1G17440.1	17340043
AT4G34340.1	CDY48302	AT1G17440.1	17340043
AT4G34340.1	CDY03944	AT1G27720.1	17340043
AT4G34340.1	CDY60273	AT1G27720.1	17340043
AT4G34340.1	CDY00904	AT3G10070.1	17340043
AT4G34340.1	CDY22214	AT3G10070.1	17340043
AT4G34340.1	CDY41320	AT3G10070.1	17340043
AT4G34340.1	CDY60164	AT3G10070.1	17340043
AT4G34340.1	CDX75423	AT4G34340.1	17340043
AT4G34340.1	CDY69783	AT4G34340.1	17340043
AT4G34340.1	CDX87098	AT5G25150.1	17340043
AT4G34340.1	CDY05378	AT5G25150.1	17340043
AT4G34340.1	CDY05473	AT5G25150.1	17340043
AT4G34340.1	CDY19814	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011521.1-P	Field mustard	nucleus	89.63	89.88
CDY69783	Canola	nucleus	85.88	83.01
AT4G34340.1	Thale cress	nucleus	65.99	64.87
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	43.52	41.03
GSMUA_Achr9P26740_001	Banana	nucleus	38.04	40.37
Solyc09g008150.1.1	Tomato	nucleus	42.07	39.14
PGSC0003DMT400009911	Potato	nucleus	41.5	38.5
KRH32528	Soybean	cytosol	38.33	37.36
KRH19914	Soybean	cytosol	38.04	37.29
GSMUA_Achr11P...	Banana	nucleus	37.75	36.29
GSMUA_Achr9P09310_001	Banana	nucleus	33.72	35.14
EES17247	Sorghum	cytosol	33.72	31.79
Zm00001d041530_P001	Maize	cytosol	32.56	31.65
Os12t0574800-02	Rice	nucleus	32.85	31.15
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	31.7	30.56
Zm00001d041766_P001	Maize	cytosol	32.56	30.54
TraesCS5A01G081700.1	Wheat	cytosol	31.7	30.39
TraesCS5B01G084700.1	Wheat	cytosol	31.7	30.39
Os03t0603300-01	Rice	cytosol, plastid	24.21	30.11
EES15849	Sorghum	cytosol	32.56	30.05
TraesCS7D01G036000.1	Wheat	mitochondrion	26.22	26.76
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	26.51	26.29
TraesCSU01G065200.1	Wheat	cytosol	26.8	26.2
CDY43254	Canola	nucleus	24.21	23.33
CDY60474	Canola	nucleus	24.5	22.55
CDX74271	Canola	cytosol	23.34	21.6
CDX91978	Canola	cytosol, extracellular, nucleus	23.34	20.82
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	23.05	20.36
CDY02371	Canola	cytosol	13.54	19.67

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlants:CDX75423	ProteinID:CDX75423	ProteinID:CDX75423.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00121311001
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
SMART:SM00576	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI0004EEFDEE	SEG:seg	:

Description

BnaA01g02790D

Coordinates

chrLK031804:-:1041492..1042535

Molecular Weight (calculated)

39248.7 Da

IEP (calculated)

5.410

GRAVY (calculated)

-0.653

Length

347 amino acids

Sequence
(BLAST)

001: MSLSERTHDG ETKDPPPSSS YEFTHAAAKS AVAQICETVG YNHFKDPPLE SLTGFAIQYI LQLGKLATSF ANLNGRSQCN VFDIVLALED LSGNDNNAEE
101: RGCSALRSVK LREIIDFVKV SDDGEEESLL LQTLPRFPVS DKRKKMMVVP SFVEVGEIPP GKHIPLWLPA FPDPHTYKET PMWIERGLDP RGDKIEQARQ
201: RRKAERALLS LQRKLVCRGD GDRVWGDMDV GGVKGEIREA ESEMPEDEKR DGVSVVEAFA PALEAARDVV FSEDHAEWKQ KKKKKPVGLS KLRTEKKFLG
301: EPLDLTLQMK GEDRSMSLRE EDRDDKRRRA EFILRQCMEN PVDLNQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.