CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00711
EES03919
EES15849
EES17247
KXG20501
KXG31790
KXG33694
OQU92338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	EES00711	AT1G02680.1	17340043
AT4G34340.1	KXG33694	AT1G17440.1	17340043
AT4G34340.1	KXG31790	AT1G27720.1	17340043
AT4G34340.1	OQU92338	AT1G27720.1	17340043
AT4G34340.1	EES03919	AT3G10070.1	17340043
AT4G34340.1	EES15849	AT4G34340.1	17340043
AT4G34340.1	EES17247	AT4G34340.1	17340043
AT4G34340.1	KXG20501	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041530_P001	Maize	cytosol	86.96	89.64
EES15849	Sorghum	cytosol	88.59	86.7
TraesCS5A01G081700.1	Wheat	cytosol	75.27	76.52
TraesCS5B01G084700.1	Wheat	cytosol	75.0	76.24
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	74.46	76.11
Os12t0574800-02	Rice	nucleus	73.37	73.77
GSMUA_Achr9P26740_001	Banana	nucleus	42.39	47.71
GSMUA_Achr11P...	Banana	nucleus	44.02	44.88
GSMUA_Achr9P09310_001	Banana	nucleus	38.59	42.64
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	41.85	41.85
KRH19914	Soybean	cytosol	37.23	38.7
VIT_14s0068g00340.t01	Wine grape	nucleus	38.32	37.4
Solyc09g008150.1.1	Tomato	nucleus	37.77	37.27
KRH32528	Soybean	cytosol	35.87	37.08
PGSC0003DMT400009911	Potato	nucleus	37.23	36.63
KRH01313	Soybean	cytosol	37.23	35.96
AT4G34340.1	Thale cress	nucleus	33.97	35.41
KRH45059	Soybean	cytosol	35.87	34.65
Bra011521.1-P	Field mustard	nucleus	32.07	34.1
CDX75423	Canola	nucleus	31.79	33.72
CDY69783	Canola	nucleus	32.34	33.15
EES07408	Sorghum	mitochondrion, plastid	19.29	28.74
Bra023525.1-P	Field mustard	cytosol	27.99	27.32
Bra008690.1-P	Field mustard	nucleus	26.63	27.07
Bra039159.1-P	Field mustard	nucleus	26.9	26.26
AT5G15570.1	Thale cress	nucleus	26.63	25.72
CDY43254	Canola	nucleus	24.73	25.28
CDY60474	Canola	nucleus	25.82	25.2
AT3G02160.1	Thale cress	cytosol	27.17	25.19
CDX74271	Canola	cytosol	25.27	24.8
Bra001033.1-P	Field mustard	cytosol	25.0	24.34
CDX91978	Canola	cytosol, extracellular, nucleus	24.18	22.88

Protein Annotations

EnsemblPlants:EES17247	EnsemblPlantsGene:SORBI_3008G139700	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:BTP	InterPro:Histone-fold	InterPro:IPR009072	InterPro:TFIID_su8_C	PANTHER:PTHR12321
PANTHER:PTHR12321:SF45	PFAM:PF07524	PFAM:PF10406	ProteinID:EES17247	ProteinID:EES17247.1	RefSeq:XP_002443409.1
SEG:seg	SMART:SM00576	UniParc:UPI0001A87FD9	UniProt:C5YQC1	MapMan:15.3.5.3.8	:

Description

hypothetical protein

Coordinates

chr8:-:57054824..57058606

Molecular Weight (calculated)

39357.7 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.398

Length

368 amino acids

Sequence
(BLAST)

001: MSGGGGSGSG SGSGDEFGRA VARAAVAQAL EAAGFDCAHR SAVDAVVDVL LRYITHLGRS AAFHANLAGR ALANELDVIQ ALEEVGNDTD GFAGAAATGH
101: CLVGSGVVRD LMAFVDTKDE VPFARPLPRF PVQRVQPPQP TASPASAAAA EGRDAGMRHV PEWLPAFPDP HTYVSTEVWV EPPPTKDRVD KVEQVRQRRK
201: AEKSLLSLQR RLAMAGADGF RPAVGVEQDS AEKGKEIQAA GTKRNPFLEP ALPPGEKDVS EVDMPPEKKK LSVLEAFAPA IQARTVREID AGAGVDQNQR
301: SIVPKERAPV HLKLGFEKKP LAAALNSRAL DLREDPSFLK EEAKDDKKRR AGMILRASME NPQELPQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.