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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra008690.1-P Field mustard nucleus 63.25 66.57
Bra023525.1-P Field mustard cytosol 62.99 63.66
AT3G02160.1 Thale cress cytosol 59.58 57.18
VIT_14s0068g00340.t01 Wine grape nucleus 33.86 34.22
KRH01313 Soybean cytosol 31.76 31.76
KRH45059 Soybean cytosol 30.97 30.97
GSMUA_Achr11P... Banana nucleus 29.13 30.75
Os12t0574800-02 Rice nucleus 27.3 28.42
GSMUA_Achr9P26740_001 Banana nucleus 24.15 28.13
EES15849 Sorghum cytosol 27.3 27.66
Zm00001d041530_P001 Maize cytosol 25.72 27.45
GSMUA_Achr9P09310_001 Banana nucleus 23.88 27.33
Zm00001d041766_P001 Maize cytosol 26.25 27.03
TraesCS5D01G090900.1 Wheat cytosol, nucleus, plastid 25.46 26.94
TraesCS5A01G081700.1 Wheat cytosol 25.46 26.8
TraesCS5B01G084700.1 Wheat cytosol 25.46 26.8
EES17247 Sorghum cytosol 25.72 26.63
Os03t0603300-01 Rice cytosol, plastid 18.9 25.81
TraesCS7A01G040600.1 Wheat cytosol, mitochondrion 23.62 25.71
AT4G34340.1 Thale cress nucleus 23.62 25.5
TraesCS7D01G036000.1 Wheat mitochondrion 22.57 25.29
TraesCSU01G065200.1 Wheat cytosol 22.05 23.66
HORVU7Hr1G006990.9 Barley mitochondrion, plastid 23.62 22.9
AT1G31240.1 Thale cress nucleus 14.96 20.58
Protein Annotations
Gene3D:1.10.20.10MapMan:15.3.5.3.8EntrezGene:831410UniProt:A0A178UC64ProteinID:AED92179.1ArrayExpress:AT5G15570
EnsemblPlantsGene:AT5G15570RefSeq:AT5G15570TAIR:AT5G15570RefSeq:AT5G15570-TAIR-GEnsemblPlants:AT5G15570.1TAIR:AT5G15570.1
Unigene:At.31783InterPro:BTPProteinID:CAC01756.1GO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005669
GO:GO:0046982InterPro:Histone-foldInterPro:IPR009072RefSeq:NP_197061.1ProteinID:OAO91373.1PFAM:PF07524
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PANTHER:PTHR12321PANTHER:PTHR12321:SF53UniProt:Q9LF25SMART:SM00576InterPro:TAF8
UniParc:UPI00000A960DSEG:seg::::
Description
Bromodomain transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LF25]
Coordinates
chr5:+:5066204..5068199
Molecular Weight (calculated)
42671.1 Da
IEP (calculated)
4.934
GRAVY (calculated)
-0.680
Length
381 amino acids
Sequence
(BLAST)
001: MINGGGEGGS QRRELQGKRS MSRGNDFAYA LARMATAQIC ESVEINSYQE SSQSREGLRF SSFQETALET LTDVVIQYIQ NIGKTAQFYV NMAGRVESNA
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.