Factsheet for GSMUA_Achr9P26740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P14200_001
GSMUA_Achr7P10670_001
GSMUA_Achr7P26980_001
GSMUA_Achr9P09310_001
GSMUA_Achr9P22400_001
GSMUA_Achr9P22410_001
GSMUA_Achr9P26740_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	GSMUA_AchrUn_...	AT1G02680.1	17340043
AT4G34340.1	GSMUA_Achr7P10670_001	AT1G17440.1	17340043
AT4G34340.1	GSMUA_Achr4P14200_001	AT1G27720.1	17340043
AT4G34340.1	GSMUA_Achr10P...	AT3G10070.1	17340043
AT4G34340.1	GSMUA_Achr11P...	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P09310_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr9P26740_001	AT4G34340.1	17340043
AT4G34340.1	GSMUA_Achr7P26980_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22400_001	AT5G25150.1	17340043
AT4G34340.1	GSMUA_Achr9P22410_001	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P09310_001	Banana	nucleus	63.0	61.86
GSMUA_Achr11P...	Banana	nucleus	60.86	55.12
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	51.99	46.2
Zm00001d041530_P001	Maize	cytosol	47.4	43.42
VIT_14s0068g00340.t01	Wine grape	nucleus	49.85	43.24
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	47.4	43.06
Zm00001d041766_P001	Maize	cytosol	48.62	42.97
TraesCS5B01G084700.1	Wheat	cytosol	47.4	42.82
TraesCS5A01G081700.1	Wheat	cytosol	47.4	42.82
EES17247	Sorghum	cytosol	47.71	42.39
KRH19914	Soybean	cytosol	45.26	41.81
Os12t0574800-02	Rice	nucleus	46.48	41.53
EES15849	Sorghum	cytosol	47.71	41.49
KRH32528	Soybean	cytosol	44.95	41.29
Os03t0603300-01	Rice	cytosol, plastid	33.95	39.78
CDY69783	Canola	nucleus	42.51	38.72
Solyc09g008150.1.1	Tomato	nucleus	44.04	38.61
PGSC0003DMT400009911	Potato	nucleus	43.73	38.24
Bra011521.1-P	Field mustard	nucleus	40.37	38.15
CDX75423	Canola	nucleus	40.37	38.04
AT4G34340.1	Thale cress	nucleus	40.98	37.96
KRH01313	Soybean	cytosol	43.73	37.53
KRH45059	Soybean	cytosol	41.9	35.96
TraesCSU01G065200.1	Wheat	cytosol	38.23	35.21
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	36.7	34.29
TraesCS7D01G036000.1	Wheat	mitochondrion	35.17	33.82
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	31.5	26.21
Bra023525.1-P	Field mustard	cytosol	28.75	24.93
Bra008690.1-P	Field mustard	nucleus	27.22	24.59
CDX74271	Canola	cytosol	28.13	24.53
Bra001033.1-P	Field mustard	cytosol	28.13	24.34
AT3G02160.1	Thale cress	cytosol	29.36	24.18
CDY43254	Canola	nucleus	26.61	24.17
AT5G15570.1	Thale cress	nucleus	28.13	24.15
CDX91978	Canola	cytosol, extracellular, nucleus	27.83	23.39
CDY60474	Canola	nucleus	26.3	22.81
Bra039159.1-P	Field mustard	nucleus	26.3	22.81

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr9G26740_001	EnsemblPlants:GSMUA_Achr9P26740_001	EnsemblPlants:GSMUA_Achr9T26740_001	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M0U3T1	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576
SUPFAM:SSF47113	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI0002965EA8	SEG:seg	:

Description

Putative bromodomain associated family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G26740_001]

Coordinates

chr9:-:31079143..31080234

Molecular Weight (calculated)

36099.7 Da

IEP (calculated)

9.124

GRAVY (calculated)

-0.486

Length

327 amino acids

Sequence
(BLAST)

001: MSDGGKESES DQQSSLKKSL PSSATDEFGR AVVKIAVAQI CETVGFQGSH YSAVDALTEV TVRYICDLGK SASFYAHLAG RTSCNVFDII QSLEDLSSQA
101: GFSGASDVHH CLVGSGVVRE ITHFVSTKEE VPFAQPIPRF PIPRVPKATP SFAQVNKEPP AKHIPDWLPR LPDPHTYVHT PVWNKRTTDA KTDKVEQARQ
201: RRKAERSLLS LQKRLASTVS ENARLHEADA GKRLSVLETF APVFEAAKVG SLDYSASDKK VVLRSRPTVH FKIGVDKKSI AASLSSNALD ARKDSWPLRD
301: DEKDDKKRRA EMILREAMEK PHDLAQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.