CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH05606
KRH06174
KRH15434
KRH15679
KRH19914
KRH30849
KRH31624
KRH31641
KRH31820
KRH32528
KRH32724
KRH47589
KRH52077
KRH52333
KRH61389
KRH61671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	KRH31624	AT1G02680.1	17340043
AT4G34340.1	KRH31641	AT1G02680.1	17340043
AT4G34340.1	KRH31820	AT1G02680.1	17340043
AT4G34340.1	KRH06174	AT1G17440.1	17340043
AT4G34340.1	KRH47589	AT1G17440.1	17340043
AT4G34340.1	KRH05606	AT1G27720.1	17340043
AT4G34340.1	KRH15434	AT1G27720.1	17340043
AT4G34340.1	KRH52077	AT1G27720.1	17340043
AT4G34340.1	KRH61389	AT1G27720.1	17340043
AT4G34340.1	KRH30849	AT3G10070.1	17340043
AT4G34340.1	KRH32724	AT3G10070.1	17340043
AT4G34340.1	KRH19914	AT4G34340.1	17340043
AT4G34340.1	KRH32528	AT4G34340.1	17340043
AT4G34340.1	KRG99418	AT5G25150.1	17340043
AT4G34340.1	KRH05348	AT5G25150.1	17340043
AT4G34340.1	KRH15679	AT5G25150.1	17340043
AT4G34340.1	KRH52333	AT5G25150.1	17340043
AT4G34340.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32528	Soybean	cytosol	80.51	80.06
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	50.28	48.37
GSMUA_Achr9P26740_001	Banana	nucleus	41.81	45.26
PGSC0003DMT400009911	Potato	nucleus	47.18	44.65
Solyc09g008150.1.1	Tomato	nucleus	46.33	43.97
AT4G34340.1	Thale cress	nucleus	39.55	39.66
GSMUA_Achr9P09310_001	Banana	nucleus	37.01	39.34
GSMUA_Achr11P...	Banana	nucleus	40.11	39.34
Bra011521.1-P	Field mustard	nucleus	38.42	39.31
Zm00001d041530_P001	Maize	cytosol	38.7	38.38
CDX75423	Canola	nucleus	37.29	38.04
CDY69783	Canola	nucleus	38.14	37.6
Os12t0574800-02	Rice	nucleus	38.7	37.43
TraesCS5A01G081700.1	Wheat	cytosol	38.14	37.29
EES17247	Sorghum	cytosol	38.7	37.23
TraesCS5B01G084700.1	Wheat	cytosol	37.85	37.02
EES15849	Sorghum	cytosol	39.27	36.97
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	37.57	36.94
KRH01313	Soybean	cytosol	39.55	36.75
Zm00001d041766_P001	Maize	cytosol	38.14	36.49
KRH45059	Soybean	cytosol	38.14	35.43
TraesCS7D01G036000.1	Wheat	mitochondrion	32.49	33.82
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	32.77	33.14
TraesCSU01G065200.1	Wheat	cytosol	32.77	32.68
Os03t0603300-01	Rice	cytosol, plastid	24.86	31.54
KRH27180	Soybean	plastid	12.15	26.71
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	27.4	24.68
KRH17259	Soybean	plastid	18.64	24.18
KRH72903	Soybean	cytosol	17.23	21.03

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100810245	MapMan:15.3.5.3.8	UniProt:A0A0R0GNI3	EMBL:ACUP02008216	InterPro:BTP
EnsemblPlantsGene:GLYMA_13G143400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	EnsemblPlants:KRH19914	ProteinID:KRH19914	ProteinID:KRH19914.1	PFAM:PF07524	PFAM:PF10406
PANTHER:PTHR12321	PANTHER:PTHR12321:SF102	SMART:SM00576	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI000233CEE2
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:25617844..25619647

Molecular Weight (calculated)

38458.4 Da

IEP (calculated)

5.116

GRAVY (calculated)

-0.455

Length

354 amino acids

Sequence
(BLAST)

001: MTNGGARAAP DDFGRAAARL AVAQLCDAAG FQGATASALD AFTDVAVRYL LDQGRTAESH ANHAGRSQCT VFDAIRGMED LEAPRAFSGA ASGGGIREII
101: SFVESADEIP FAQPIPNFPV VQERRRIIPS FDQMGEAPPA KHIPAWLPAL PDPHTYIHTP VWDERISDPR EDKIEQARQR RKAERSLLSL QKRLLLRNGS
201: VEASAITSSS PNSAALDPQV VGEDDKVVDK DVEKVVKVSV LEEAGGDGDG KRVSVLEAFG PAIEMLGSGG LCDEDDGLGE KEKSELPVVR PTVHFKFRTG
301: KKLIGESLDM RIRKKDASPT AVLAGREDER DDKKRRAEYI LKQSMENPQE LTLL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.