CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24106
KRH27822
KRH29080
KRH77666

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31240.1	KRH24106	AT1G50420.1	21798944
AT1G31240.1	KRH27822	AT1G50420.1	21798944
AT1G31240.1	KRH29080	AT1G50420.1	21798944
AT1G31240.1	KRH77666	AT1G50420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17259	Soybean	plastid	62.41	66.3
KRH27180	Soybean	plastid	36.55	65.84
VIT_01s0011g01670.t01	Wine grape	nucleus	29.66	33.86
Os02t0699900-01	Rice	cytosol, nucleus, plastid	22.76	27.62
Solyc02g069170.1.1	Tomato	mitochondrion	25.86	26.79
AT1G31240.1	Thale cress	nucleus	25.52	26.71
PGSC0003DMT400026858	Potato	mitochondrion, nucleus	24.48	26.2
EES07408	Sorghum	mitochondrion, plastid	20.34	23.89
Bra023170.1-P	Field mustard	nucleus	22.07	23.1
Zm00001d000165_P001	Maize	mitochondrion	17.93	20.88
Zm00001d050853_P001	Maize	cytosol	15.17	19.21
CDY02371	Canola	cytosol	14.83	17.99
KRH01313	Soybean	cytosol	23.1	17.59
KRH45059	Soybean	cytosol	23.1	17.59
KRH19914	Soybean	cytosol	21.03	17.23
KRH32528	Soybean	cytosol	20.69	16.85

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102667916	MapMan:15.3.5.3.8	EMBL:ACUP02001253	InterPro:BTP	EnsemblPlantsGene:GLYMA_02G239900
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:K7KAF5	EnsemblPlants:KRH72903	ProteinID:KRH72903	ProteinID:KRH72903.1	ProteinID:KRH72904.1	PFAM:PF07524
PANTHER:PTHR12321	PANTHER:PTHR12321:SF38	SMART:SM00576	UniParc:UPI0002950A59	:	:

Description

hypothetical protein

Coordinates

chr2:+:42853091..42855600

Molecular Weight (calculated)

32347.7 Da

IEP (calculated)

9.675

GRAVY (calculated)

-0.596

Length

290 amino acids

Sequence
(BLAST)

001: MNPMENNSST NATSKLPQKA KRKKKGLGVN VAQVADNTSE FSFAVAKIAV AQICQSAGYK SSKHNALEAL TNVSTRYMEA IVRSAATFAN ASNRTDSNLF
101: DLTNGIHDVC SVQGFPGGSI IHKSNLLGSS ALKEIMNFVN LSNKVPFAKP IPFRNVSEVT IDSGTSMCLS KQVKTHIPRW LPHFPKENCA QVLVKERKCD
201: EKLWEHSLTR EENSGLLPSN GIDGKEEKEA RMELPKGRER IKFRIRGEKE MHVELGVNMM NGVCKGRKRV SWNHDKINDC MVEENEDEKR

Best Arabidopsis Sequence Match ( AT1G31240.1 )
(BLAST)

001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF

Arabidopsis Description

At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.