Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 6
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc01g008910.2.1 | |
| Solyc12g099900.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G31240.1 | Solyc01g008910.2.1 | AT1G50420.1 | 21798944 |
| AT1G31240.1 | Solyc12g099900.1.1 | AT1G50420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 66.43 | 68.63 |
| KRH27180 | Soybean | plastid | 17.86 | 31.06 |
| Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 25.36 | 29.71 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 26.07 | 28.74 |
| KRH17259 | Soybean | plastid | 26.43 | 27.11 |
| KRH72903 | Soybean | cytosol | 26.79 | 25.86 |
| AT1G31240.1 | Thale cress | nucleus | 25.36 | 25.63 |
| Bra023170.1-P | Field mustard | nucleus | 25.0 | 25.27 |
| Zm00001d000165_P001 | Maize | mitochondrion | 21.43 | 24.1 |
| EES07408 | Sorghum | mitochondrion, plastid | 21.07 | 23.89 |
| Solyc09g008150.1.1 | Tomato | nucleus | 27.14 | 20.38 |
| Zm00001d050853_P001 | Maize | cytosol | 16.43 | 20.09 |
| CDY02371 | Canola | cytosol | 17.14 | 20.08 |
Protein Annotations
| EnsemblPlants:Solyc02g069170.1.1 | EnsemblPlantsGene:Solyc02g069170.1 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 |
| PFAM:PF07524 | SEG:seg | SMART:SM00576 | UniParc:UPI0002767EE2 | UniProt:K4B7P9 | MapMan:15.3.5.3.8 |
Description
No Description!
Coordinates
chr2:-:39113737..39114579
Molecular Weight (calculated)
30417.4 Da
IEP (calculated)
10.152
GRAVY (calculated)
-0.413
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSKSNRNRP VAAKATAVVI PPPPSTPLSE SDYAFTITRT AVAQICSSIG FTAAEAPVLG ILTDIAIRYL RTIAKSAADS ANSACRTQAN LVDTIAAVDE
101: LSSVSGFPGA WRATDCFLNS GAVKKLDTFT EDSKEIPFAK PLPRKIFSLG SRKGLRNVGS SSKIEYLGGD KKHIPKWLPV MPVIVNHEKE IVEKRKRELW
201: GYCGAKTEEE PKREKKTAAD SVEKERKGLE LPLKRGKVRF KIGGGGVSGV CRSGGIGKRV LCENWNFDDE NSHQNKNSQL
101: LSSVSGFPGA WRATDCFLNS GAVKKLDTFT EDSKEIPFAK PLPRKIFSLG SRKGLRNVGS SSKIEYLGGD KKHIPKWLPV MPVIVNHEKE IVEKRKRELW
201: GYCGAKTEEE PKREKKTAAD SVEKERKGLE LPLKRGKVRF KIGGGGVSGV CRSGGIGKRV LCENWNFDDE NSHQNKNSQL
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.