Factsheet for Bra023170.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra014251.1-P
Bra018848.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31240.1	Bra014251.1-P	AT1G50420.1	21798944
AT1G31240.1	Bra018848.1-P	AT1G50420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02371	Canola	cytosol	70.04	81.17
AT1G31240.1	Thale cress	nucleus	54.15	54.15
KRH27180	Soybean	plastid	19.49	33.54
VIT_01s0011g01670.t01	Wine grape	nucleus	27.8	30.32
PGSC0003DMT400026858	Potato	mitochondrion, nucleus	26.71	27.31
KRH17259	Soybean	plastid	25.63	26.01
Solyc02g069170.1.1	Tomato	mitochondrion	25.27	25.0
EES07408	Sorghum	mitochondrion, plastid	21.3	23.89
Os02t0699900-01	Rice	cytosol, nucleus, plastid	20.58	23.85
Zm00001d000165_P001	Maize	mitochondrion	20.58	22.89
Zm00001d050853_P001	Maize	cytosol	18.41	22.27
KRH72903	Soybean	cytosol	23.1	22.07
Bra001033.1-P	Field mustard	cytosol	25.27	18.52
Bra011521.1-P	Field mustard	nucleus	22.74	18.21
Bra008690.1-P	Field mustard	nucleus	23.47	17.96
Bra039159.1-P	Field mustard	nucleus	24.19	17.77
Bra023525.1-P	Field mustard	cytosol	23.83	17.51

Protein Annotations

EnsemblPlants:Bra023170.1	EnsemblPlants:Bra023170.1-P	EnsemblPlantsGene:Bra023170	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:BTP	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR12321
PANTHER:PTHR12321:SF38	PFAM:PF07524	SEG:seg	SMART:SM00576	UniParc:UPI0002542458	UniProt:M4E319
MapMan:15.3.5.3.8	:	:	:	:	:

Description

AT1G31240 (E=8e-072) | DNA binding

Coordinates

chrA09:+:21056472..21057305

Molecular Weight (calculated)

30606.8 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.486

Length

277 amino acids

Sequence
(BLAST)

001: MKRRRKARVN SEAPDDQSAA EFSFSLTRVA VSQICLSVGY TSTDTSSTLN TLTLITTKFL QSIAELAASF SNSANRTEAN LFDIVNGLHD TALSTSDCFP
101: GGSTLHNTES LCLIKSAVLR NLSDFVASAF EIPFAKPLPR LEISGSYGGD STRTAPSPEM RSIPAWLPPF PDSSLYRERY AKERSDRLPD SVIGRETFAE
201: ASGVESCRGR SGGRLPLRRA SVRFKVERDW SNGGGSCKSN TRLERWRDNK EGEFEVKKKI GEEYIYCADI DAGQWDM

Best Arabidopsis Sequence Match ( AT1G31240.1 )
(BLAST)

001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF

Arabidopsis Description

At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.