Factsheet for Bra011521.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra020485.1-P
Bra025975.1-P
Bra029816.1-P
Bra030061.1-P
Bra030508.1-P
Bra030989.1-P
Bra033338.1-P
Bra034092.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34340.1	Bra030508.1-P	AT1G02680.1	17340043
AT4G34340.1	Bra033338.1-P	AT1G02680.1	17340043
AT4G34340.1	Bra025975.1-P	AT1G17440.1	17340043
AT4G34340.1	Bra030989.1-P	AT1G17440.1	17340043
AT4G34340.1	Bra030061.1-P	AT1G27720.1	17340043
AT4G34340.1	Bra029816.1-P	AT3G10070.1	17340043
AT4G34340.1	Bra034092.1-P	AT3G10070.1	17340043
AT4G34340.1	Bra011521.1-P	AT4G34340.1	17340043
AT4G34340.1	Bra020485.1-P	AT5G25150.1	17340043
AT4G34340.1	Bra036534.1-P	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75423	Canola	nucleus	89.88	89.63
AT4G34340.1	Thale cress	nucleus	66.47	65.16
GSMUA_Achr9P26740_001	Banana	nucleus	38.15	40.37
VIT_08s0040g01420.t01	Wine grape	cytosol, nucleus, plastid	42.77	40.22
KRH19914	Soybean	cytosol	39.31	38.42
PGSC0003DMT400009911	Potato	nucleus	41.04	37.97
Solyc09g008150.1.1	Tomato	nucleus	40.75	37.8
KRH32528	Soybean	cytosol	37.57	36.52
GSMUA_Achr11P...	Banana	nucleus	36.42	34.9
GSMUA_Achr9P09310_001	Banana	nucleus	33.53	34.83
EES17247	Sorghum	cytosol	34.1	32.07
Zm00001d041530_P001	Maize	cytosol	32.95	31.93
Os12t0574800-02	Rice	nucleus	32.95	31.15
Zm00001d041766_P001	Maize	cytosol	32.66	30.54
Os03t0603300-01	Rice	cytosol, plastid	24.57	30.47
EES15849	Sorghum	cytosol	32.95	30.32
TraesCS5A01G081700.1	Wheat	cytosol	31.21	29.83
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	30.92	29.72
TraesCS5B01G084700.1	Wheat	cytosol	30.92	29.56
TraesCS7D01G036000.1	Wheat	mitochondrion	26.01	26.47
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	26.3	26.0
TraesCSU01G065200.1	Wheat	cytosol	26.59	25.92
Bra008690.1-P	Field mustard	nucleus	23.99	22.93
Bra023170.1-P	Field mustard	nucleus	18.21	22.74
Bra039159.1-P	Field mustard	nucleus	24.57	22.55
Bra023525.1-P	Field mustard	cytosol	24.57	22.55
Bra001033.1-P	Field mustard	cytosol	23.12	21.16
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	23.41	20.61

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlantsGene:Bra011521	EnsemblPlants:Bra011521.1	EnsemblPlants:Bra011521.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold
InterPro:IPR009072	UniProt:M4D4W4	PFAM:PF07524	PFAM:PF10406	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
SMART:SM00576	InterPro:TAF8	InterPro:TFIID_su8_C	UniParc:UPI0002545712	SEG:seg	:

Description

AT4G34340 (E=3e-108) TAF8 | TAF8 (TBP-ASSOCIATED FACTOR 8); DNA binding

Coordinates

chrA01:+:1839607..1840647

Molecular Weight (calculated)

39135.6 Da

IEP (calculated)

5.167

GRAVY (calculated)

-0.654

Length

346 amino acids

Sequence
(BLAST)

001: MSLSERTHDG ETKDPPPSSY EFTHAAAKSA VAQICEPVGY NHFKDPPLES LTGFAIQYIL QLGKIATSFA NLNGRSQCNV FDIVLALEDL SGNDNNAEER
101: GCSALRSVKL REIIDFVKVS DDGEEESLLL QTLPRFPVSD KRKKMMVVPS FVEVGEIPPG KHIPLWLPAF PDPHTYKETP MWIERGLDPR GDKIEQARQR
201: RKAERALLSL QRKLVCRGDG DRVWGDMDVG GVKGEIREAE SEMPEDEKRD GVSVVEAFAP ALEAARDVVF SEDDAEWKQK KKKKPVGLSK LRTEKKFLGE
301: PLDLTLQMKG EDRSMSLREE DRDDKRRRAE FILRQCMENP VDLNQL

Best Arabidopsis Sequence Match ( AT4G34340.1 )
(BLAST)

001: MNTERAQEGD RNDAASSSGC SESYEFSHAA AKAAVAQVCE SVGYENFKDP ALESLSGFAL QYILQLGKTA TSFANLTGRS QCNVFDIILA LDDLTDNNGE
101: QGISSESCSL GRSIKLREII DFVNSSEEVP FSQPLPSFPV AISDRSRKMI PSFVEIGETP PGKHIPLWLP AFPDPHTYKE TPMWIERVSD PRGDKIEQAR
201: QRRKAERALL SLQRKLVCKI SSRNPVWGDM DGVKEEMRDD ESELRSVSSG EKVESLNRDG LSVIEAFAPA MEAARDGFSS EAHTEWKKNK PVALSKLRTE
301: KKFLGQPLDL SLQMKGEDRP ISFVREEDRD DKRRRAEFIL RQCMENPVDL NQL

Arabidopsis Description

TAF8Transcription initiation factor TFIID subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYZ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.