Factsheet for Bra030061.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra011521.1-P
Bra014245.1-P
Bra018839.1-P
Bra020485.1-P
Bra025975.1-P
Bra029816.1-P
Bra030989.1-P
Bra034092.1-P
Bra036534.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G27720.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G27720.1	Bra014245.1-P	AT1G50300.1	17340043
AT1G27720.1	Bra018839.1-P	AT1G50300.1	17340043
AT1G27720.1	Bra029816.1-P	AT3G10070.1	17340043
AT1G27720.1	Bra034092.1-P	AT3G10070.1	17340043
AT1G27720.1	Bra011521.1-P	AT4G34340.1	17340043
AT1G27720.1	Bra020485.1-P	AT5G25150.1	17340043
AT1G27720.1	Bra036534.1-P	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60273	Canola	nucleus	81.2	90.81
AT1G27720.1	Thale cress	nucleus	39.98	44.58
Bra033662.1-P	Field mustard	nucleus	34.87	36.32
Bra035961.1-P	Field mustard	nucleus	33.62	34.66
VIT_18s0001g09310.t01	Wine grape	nucleus	31.63	27.43
KRH61389	Soybean	nucleus	30.01	26.34
Solyc04g078050.2.1	Tomato	nucleus	30.26	26.02
KRH15434	Soybean	nucleus	30.01	25.78
KRH52077	Soybean	nucleus	29.89	25.72
KXG31790	Sorghum	nucleus	23.41	25.47
Os02t0654400-01	Rice	nucleus	22.79	25.14
GSMUA_Achr4P14200_001	Banana	cytosol	2.12	25.0
TraesCS4A01G163100.1	Wheat	nucleus	25.4	24.37
Zm00001d039729_P004	Maize	nucleus	23.41	24.32
Os03t0441000-01	Rice	nucleus	24.78	24.3
KRH05606	Soybean	mitochondrion	29.51	24.28
HORVU6Hr1G062340.1	Barley	nucleus	23.79	24.12
TraesCS6A01G242900.1	Wheat	nucleus	23.79	24.0
TraesCS4B01G150300.3	Wheat	nucleus	25.28	23.91
TraesCS6B01G281300.1	Wheat	nucleus	23.66	23.9
TraesCS4D01G160000.1	Wheat	nucleus	24.78	23.52
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	25.16	23.25
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	24.16	23.15
OQU92338	Sorghum	nucleus	24.53	21.86
Zm00001d029598_P003	Maize	nucleus	23.54	20.37
Zm00001d039731_P002	Maize	nucleus	11.96	18.25
PGSC0003DMT400055395	Potato	nucleus	11.83	16.21

Protein Annotations

MapMan:15.3.5.3.4	EnsemblPlantsGene:Bra030061	EnsemblPlants:Bra030061.1	EnsemblPlants:Bra030061.1-P	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0006139
GO:GO:0006352	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987
UniProt:M4EMP1	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14	InterPro:RST
InterPro:TAF4	UniParc:UPI000254113C	SEG:seg	:	:	:

Description

AT1G27720 (E=3e-132) TAF4, TAF4B | TAF4B (TBP-ASSOCIATED FACTOR 4B); transcription initiation factor

Coordinates

chrA07:+:6888431..6901943

Molecular Weight (calculated)

90578.5 Da

IEP (calculated)

9.994

GRAVY (calculated)

-0.809

Length

803 amino acids

Sequence
(BLAST)

001: MRLRFRRCVS KLSLLDESPK RHENLTEGVN LKPVSFMSQF HRSRPDCNLC ASWVRFYLYK RMNALITLCF HGHMFLQTKK YCVLLYIKEK ILKKLSKQQD
101: ESMHSKEDVD AFQASLIREI EGGNHSWSQQ FAAWNNGITR DANTNKLHIL ESTQMKEQQQ QQQQQHSDRE LKPEDESPVQ LNHNLPQNHL QPDGLSENPS
201: HVPQATDLQS RNNSISMEQP VGSVNLGPTQ LQVGELFRLL RPQVDKDRGK QLNTLFYKFK SNEVTKESFL RQARNIVGER MILWAVRKLQ QQGNKGVKVP
301: DGSNHYREPF TSAEDQSLIQ SLTEDISAKK SDTYGSHDNQ LHSTSSGTLS SSATVHGLHN SESPVSVNGP AMVHGGPIFP NQNNSSLPIN PAPCRGSVTK
401: DQTMSNDQTV AHVKQKLTDQ SFDQVRKPCP VVRQDVSNVP MEQRNGNPRR SDDDLLKQSS EMVLSAPTTH ANFASPSVKT QLDSSTMVNF SAPAATIFPG
501: TIVTTTQGQK KTLEAQGSSL PPLSKRQKLC ETSLAGSGKK FNDVTELSGI NLMEEERELL SSLTKNNSRV FKSFRRVAYE EEGRTILQKA PLQRKLAGIM
601: AKSGIKHIKD DVERCLSLCV EERMRVLLSK IIRTSKQRTD PEKCRNRICI TSDIRKQINE MNQKEKDEQE KKHGGEEELK NDTAKEDKRS EQVKANKEQA
701: EKRAKAANDA ALASVGGDNV FSKWKLMAEA RQKPSSETRR NAKKLSGGQR LGKKNHGSPK VVRSISVKDV IAVVEKEHQM SRSTLLYRLY DSICSYVPTQ
801: DKT

Best Arabidopsis Sequence Match ( AT1G27720.4 )
(BLAST)

001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEEKPQ PRYMKLQKMS SKETPWVEKT VDPVNHNLRL ARVTDLLRTV VDHQPGKKTH CLNLHYKLKR
101: KELTMEEFMR QLRDLVGDQI IRSVISQLPQ LKPGNMGIKV PGRSNHDKVS KSAEFTAQES DPREVHVNQL SSTTSGTLNS STTVQGLNKH PEQHMQLPSS
201: SFHMDTKSGS LNPYPGTNVT SPGSSSRAKL PDFQHRENNQ NVGIASVGGP TKSTINMTTV PKFERPTFVN GPSRVQDGPI SDFPKNSSFP LYSAPWQGSV
301: TKDHTVGPSS SVIHVEHKLI DQSFEQAHKP RYLVQQGVTN VPLKQKNAIP ISSNDDLEKQ SSKMGLFTST TSASSVFPSM TTQLDSSTMV NMPAPSETIP
401: KIANVTVTPK MPSVGQKKPL EALGSSLPPS RKKQKICGTS SDESIEKFND VTAVSGINLR EEEKQLLDSG PKKNDRVSKA YRRLVHGEEE RTLLQKIPLQ
501: RKLTEIMGKS GLKHIDHDVE RCLSLCVEER MRGLLFNIIR ISKQRTDAEK CRNRTFITSD IRKEINEMNQ KVKEEWEKKH SGEEKNKEND TEKEDQRSNE
601: VKANKKDEDK ERAKAANVAV RAAVGGDDRF SKWKLMAEAR QRSSPGPGRN SKKLSGGTQF GKNQGLPKVV RSISVKDVIA VVEKEPQMSR STLLYRVYNR
701: ICSDV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.