CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99418
KRH05348
KRH06174
KRH15679
KRH19914
KRH24217
KRH29220
KRH30849
KRH32528
KRH32724
KRH47589
KRH52333
KRH61671
KRH62947
KRH75898

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27720.1	KRH06174	AT1G17440.1	17340043
AT1G27720.1	KRH47589	AT1G17440.1	17340043
AT1G27720.1	KRH24217	AT1G50300.1	17340043
AT1G27720.1	KRH29220	AT1G50300.1	17340043
AT1G27720.1	KRH62947	AT1G50300.1	17340043
AT1G27720.1	KRH75898	AT1G50300.1	17340043
AT1G27720.1	KRH30849	AT3G10070.1	17340043
AT1G27720.1	KRH32724	AT3G10070.1	17340043
AT1G27720.1	KRH19914	AT4G34340.1	17340043
AT1G27720.1	KRH32528	AT4G34340.1	17340043
AT1G27720.1	KRG99418	AT5G25150.1	17340043
AT1G27720.1	KRH05348	AT5G25150.1	17340043
AT1G27720.1	KRH15679	AT5G25150.1	17340043
AT1G27720.1	KRH52333	AT5G25150.1	17340043
AT1G27720.1	KRH61671	AT5G25150.1	17340043

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15434	Soybean	nucleus	90.06	94.01
KRH52077	Soybean	nucleus	60.96	63.77
KRH61389	Soybean	nucleus	59.53	63.5
CDX71498	Canola	cytosol	6.45	59.43
CDX71499	Canola	nucleus	8.2	50.31
VIT_18s0001g09310.t01	Wine grape	nucleus	47.54	50.11
Solyc04g078050.2.1	Tomato	nucleus	44.88	46.9
Bra035961.1-P	Field mustard	nucleus	36.78	46.08
GSMUA_Achr4P14200_001	Banana	cytosol	3.18	45.59
Bra033662.1-P	Field mustard	nucleus	35.35	44.75
AT5G43130.2	Thale cress	nucleus	38.42	44.01
Os03t0441000-01	Rice	nucleus	30.74	36.63
TraesCS4A01G163100.1	Wheat	nucleus	31.35	36.56
AT1G27720.1	Thale cress	nucleus	26.84	36.39
TraesCS4B01G150300.3	Wheat	nucleus	31.25	35.92
Os02t0654400-01	Rice	nucleus	26.64	35.71
TraesCS4D01G160000.1	Wheat	nucleus	30.94	35.7
KXG31790	Sorghum	nucleus	26.95	35.64
OQU92338	Sorghum	nucleus	32.48	35.18
HORVU4Hr1G034590.13	Barley	cytosol, nucleus	30.84	34.64
Zm00001d039729_P004	Maize	nucleus	26.74	33.76
PGSC0003DMT400055395	Potato	nucleus	19.98	33.28
Zm00001d029598_P003	Maize	nucleus	31.56	33.19
HORVU6Hr1G062340.1	Barley	nucleus	26.43	32.58
TraesCS6A01G242900.1	Wheat	nucleus	26.54	32.54
TraesCS6B01G281300.1	Wheat	nucleus	26.33	32.33
TraesCS6D01G225200.2	Wheat	endoplasmic reticulum, nucleus, peroxisome, plastid	26.43	30.79
Bra030061.1-P	Field mustard	mitochondrion, nucleus	24.28	29.51
Zm00001d039731_P002	Maize	nucleus	12.6	23.38

Protein Annotations

EntrezGene:100783067	MapMan:15.3.5.3.4	EMBL:ACUP02010763	EnsemblPlantsGene:GLYMA_17G236600	GO:GO:0001075	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003713	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669
GO:GO:0006139	GO:GO:0006352	GO:GO:0008134	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0045944	GO:GO:0051123	UniProt:K7MNL8	EnsemblPlants:KRH05606
ProteinID:KRH05606	ProteinID:KRH05606.1	PFAM:PF05236	PFAM:PF12174	PANTHER:PTHR15138	PANTHER:PTHR15138:SF14
InterPro:RST	InterPro:TAF4	UniParc:UPI000296422E	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:39177185..39187184

Molecular Weight (calculated)

106262.0 Da

IEP (calculated)

9.608

GRAVY (calculated)

-0.794

Length

976 amino acids

Sequence
(BLAST)

001: MILARNFGMG SQYHKFITMK LNSIVVLSRS NRDNECGEVA MDPSIMKLLE DDEDEAMHSG VDVEAFQAAL NRDIGGDVST SQFSGSDAVL SQGSNNTSSQ
101: SLSQWPTSNH DSQTDCQKQE SKTAQQQDQP SSGVELKQRG SLAEQLHHVA SQDINNPHLS QKQSQDECHQ APALQVSLHN SQAIGIQNSG KDPVLNNEVV
201: KNHNPSSESQ YAKLQQMSNQ QATVSEQPSS QGNRSTSKQV PFGMLLPILL PQLAKDRAMQ LQTLFAKLKK EEIPKDSFVR LMKGIVGDQM LRLALAKVQV
301: QPQTRPNQAS AGQQHPMRMP TVGSGASQLN DPHALAEMHQ RSMNAAVDQS RMGSSAGQTM ESNARKSQEL DVKIESQGLQ PSQLTSSSSN KIAQETERTS
401: VHIQGLNKQQ QQHLHFPSAY GNSGGNYNPF SGTTSSSTSS IKSQSHDSHM SQISYQSIGS NHHLGGSTHG LNVIGMSKLE QQNSFNDPKR LPGGSVSPAV
501: NNTVSQQTKN AWQPSTNKEQ NLGLLSSVSY VKKEPSDLST EQQNRHNLSK LHGYSSVNSA QLEQGGASQG TVKDEFSRGL PAPPSKPPTS TGLLPQSSSS
601: PSVMTQLGPG VSLSTQIPSN ASGIGARTSL KKPAAAQKKP HEALGSSPPP ANKKQKTSGG SVEQSIEQLN DVTAVSGVDL REEEEQLFSG PKEDSRVSEA
701: SRKAVQEEEE RLILQKAPLQ KKLIDIMAKC GLKGMSNDVE KCLSLCVEER MRGLISNLIR ISKQRVDFEK TRHRTVVTSD VRQQIMTINR KVRKEWDIKQ
801: AEAEKIRKLH NVDSNTGVDG DKEKDDGRGK STKVNKEEDE KMRTNAANVA ARAAYGGDDM MSKWQLMAEQ AKQKREGGVD VSSGSQPAKD VNRKSLSTSG
901: RSTKDNQEGE KKGSSTFIAS SVARKLGRSH AMASQTRVAR SISVKDVIAV LEREPHMSKS PLIHRLYERI HSDAPV

Best Arabidopsis Sequence Match ( AT1G27720.1 )
(BLAST)

001: MDLSIVKLLE EDEEVDSKHS EDDLQMFQDS LIRDIEGSNL KSINNTTGNE SEKPQPRYMK LQKMSSKETP WVEKTVDPVN HNLRLARVTD LLRTVVDHQP
101: GKKTHCLNLH YKLKRKELTM EEFMRQLRDL VGDQIIRSVI SQLPQLKPGN MGIKVPGRSN HDKVSKSAEF TAQESDPREV HVNQLSSTTS GTLNSSTTVQ
201: GLNKHPEQHM QLPSSSFHMD TKSGSLNPYP GTNVTSPGSS SRAKLPDFQH RENNQNVGIA SVGGPTKSTI NMTTVPKFER PTFVNGPSRV QDGPISDFPK
301: NSSFPLYSAP WQGSVTKDHT VGPSSSVIHV EHKLIDQSFE QAHKPRYLVQ QGVTNVPLKQ KNAIPISSND DLEKQSSKMG LFTSTTSASS VFPSMTTQLD
401: SSTMVNMPAP SETIPKIANV TVTPKMPSVG QKKPLEALGS SLPPSRKKQK ICGTSSDESI EKFNDVTAVS GINLREEEKQ LLDSGPKKND RVSKAYRRLV
501: HGEEERTLLQ KIPLQRKLTE IMGKSGLKHI DHDVERCLSL CVEERMRGLL FNIIRISKQR TDAEKCRNRT FITSDIRKEI NEMNQKVKEE WEKKHSGEEK
601: NKENDTEKED QRSNEVKANK KDEDKERAKA ANVAVRAAVG GDDRFSKWKL MAEARQRSSP GPGRNSKKLS GGTQFGKNQG LPKVVRSISV KDVIAVVEKE
701: PQMSRSTLLY RVYNRICSDV

Arabidopsis Description

TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.