CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRH05606
KRH06174
KRH15434
KRH36141
KRH47589
KRH52077
KRH52586
KRH61389
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	KRH06174	AT1G17440.1	17340043
AT1G50300.1	KRH47589	AT1G17440.1	17340043
AT1G50300.1	KRH05606	AT1G27720.1	17340043
AT1G50300.1	KRH15434	AT1G27720.1	17340043
AT1G50300.1	KRH52077	AT1G27720.1	17340043
AT1G50300.1	KRH61389	AT1G27720.1	17340043
AT1G50300.1	KRH52586	AT1G71230.1	21798944
AT1G50300.1	KRH61926	AT1G71230.1	21798944
AT1G50300.1	KRG90619	AT5G08330.1	21798944
AT1G50300.1	KRH36141	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24217	Soybean	nucleus	87.05	87.96
KRH75898	Soybean	nucleus	43.26	86.98
KRH62947	Soybean	nucleus	31.09	85.11
VIT_01s0010g01410.t01	Wine grape	nucleus	76.94	71.74
AT1G50300.1	Thale cress	nucleus	68.13	70.7
PGSC0003DMT400048896	Potato	nucleus	70.73	70.54
Solyc11g040050.1.1	Tomato	nucleus	69.69	69.15
Bra018839.1-P	Field mustard	nucleus	66.06	67.64
CDY42510	Canola	nucleus	67.1	67.62
CDY22787	Canola	nucleus	65.8	67.37
CDY67548	Canola	nucleus	66.32	67.37
CDY03594	Canola	nucleus	66.06	67.28
Bra014245.1-P	Field mustard	nucleus	66.06	67.11
Os09t0299500-01	Rice	nucleus	27.72	66.88
EER99320	Sorghum	nucleus	66.06	65.05
Os07t0296200-01	Rice	nucleus	66.06	64.72
Zm00001d021426_P002	Maize	nucleus	64.25	63.59
TraesCS5B01G176600.1	Wheat	nucleus	64.25	63.43
HORVU5Hr1G054500.18	Barley	nucleus	63.99	63.01
TraesCS5A01G178900.3	Wheat	nucleus	63.99	60.69
TraesCS5D01G183400.3	Wheat	nucleus	63.47	60.2
GSMUA_Achr8P27040_001	Banana	cytosol	14.77	55.34
GSMUA_Achr8P27030_001	Banana	cytosol	18.39	47.65
GSMUA_Achr6P27180_001	Banana	nucleus	68.39	43.21

Protein Annotations

EntrezGene:100793376	MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	EMBL:ACUP02006790	ncoils:Coil
EnsemblPlantsGene:GLYMA_11G103900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872
UniProt:I1LIW0	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	EnsemblPlants:KRH29220	ProteinID:KRH29220
ProteinID:KRH29220.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102
PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI0002961670	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:7887039..7891583

Molecular Weight (calculated)

42837.9 Da

IEP (calculated)

7.340

GRAVY (calculated)

-1.224

Length

386 amino acids

Sequence
(BLAST)

001: MASNPGNHAP SNGSVYVCNL PYGTDDIMLA EYFGTIGLIK KDKRTGRPKI WLYRDKETNE PKGDATVTYE DPHAAVAAVE WFNNKDFHGN TIGVFIAESK
101: NKDEQAYNAA VEPVVADDVG GLEETTKDVN GGSGRGRGQN DSSGKAWQQD GDWLCLNTSC SNVNFAFRGA CNRCGTARPA GASGISGAGG RGKGRAAQES
201: GGIGRPAGGG LFGPNDWPCP MCGNINWAKR TKCNICNTNK PGHNEGGVRG GRGGGYKELD EEEIEETRRR RREAEDDGEL YDEFGNLKKK YRAKTQQAEA
301: ARGLPGSGRA GWEVEELGID RDARESRDRG RERNDGESRN RERSEKERPS SWNRERERGR DRDWDYVDRD RDYGRDRDRD RSRHRY

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.