Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G50300.1 | KXG33694 | AT1G17440.1 | 17340043 |
| AT1G50300.1 | KXG31790 | AT1G27720.1 | 17340043 |
| AT1G50300.1 | OQU92338 | AT1G27720.1 | 17340043 |
| AT1G50300.1 | KXG27287 | AT1G71230.1 | 21798944 |
| AT1G50300.1 | EES07800 | AT5G08330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d021426_P002 | Maize | nucleus | 87.76 | 88.21 |
| Os09t0299500-01 | Rice | nucleus | 34.95 | 85.62 |
| Os07t0296200-01 | Rice | nucleus | 82.65 | 82.23 |
| TraesCS5B01G176600.1 | Wheat | nucleus | 77.3 | 77.49 |
| HORVU5Hr1G054500.18 | Barley | nucleus | 76.53 | 76.53 |
| TraesCS5A01G178900.3 | Wheat | nucleus | 77.04 | 74.2 |
| TraesCS5D01G183400.3 | Wheat | nucleus | 76.79 | 73.96 |
| KRH62947 | Soybean | nucleus | 25.77 | 71.63 |
| PGSC0003DMT400048896 | Potato | nucleus | 68.88 | 69.77 |
| Solyc11g040050.1.1 | Tomato | nucleus | 68.11 | 68.64 |
| KRH75898 | Soybean | nucleus | 33.42 | 68.23 |
| CDY03594 | Canola | nucleus | 64.8 | 67.02 |
| AT1G50300.1 | Thale cress | nucleus | 63.52 | 66.94 |
| KRH29220 | Soybean | nucleus | 65.05 | 66.06 |
| CDY42510 | Canola | nucleus | 64.54 | 66.06 |
| CDY67548 | Canola | nucleus | 64.03 | 66.05 |
| Bra014245.1-P | Field mustard | nucleus | 63.78 | 65.79 |
| CDY22787 | Canola | nucleus | 63.27 | 65.78 |
| Bra018839.1-P | Field mustard | nucleus | 63.27 | 65.78 |
| VIT_01s0010g01410.t01 | Wine grape | nucleus | 69.39 | 65.7 |
| KRH24217 | Soybean | nucleus | 63.27 | 64.92 |
| GSMUA_Achr8P27040_001 | Banana | cytosol | 15.31 | 58.25 |
| GSMUA_Achr8P27030_001 | Banana | cytosol | 17.86 | 46.98 |
| GSMUA_Achr6P27180_001 | Banana | nucleus | 68.88 | 44.19 |
Protein Annotations
| MapMan:15.3.5.3.15 | Gene3D:3.30.70.330 | Gene3D:4.10.1060.10 | EntrezGene:8077228 | UniProt:C5X7P2 | ncoils:Coil |
| EnsemblPlants:EER99320 | ProteinID:EER99320 | ProteinID:EER99320.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR001876 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00641 | ScanProsite:PS01358 | PFscan:PS50102 | PFscan:PS50199 | PANTHER:PTHR12999 |
| PANTHER:PTHR12999:SF7 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM00547 | EnsemblPlantsGene:SORBI_3002G290300 |
| SUPFAM:SSF54928 | SUPFAM:SSF90209 | unigene:Sbi.16073 | UniParc:UPI0001A83E8C | RefSeq:XP_002462799.1 | InterPro:Znf_RanBP2 |
| InterPro:Znf_RanBP2_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:66869236..66874533
Molecular Weight (calculated)
43335.8 Da
IEP (calculated)
8.956
GRAVY (calculated)
-1.297
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYMSRGPP NGCVYVCNLP PGTDEDMLAE YFGTIGLLKK DKRTGRPKIW IYRDKVTNEP KGDATVTYED PHAASAAVEW FNNKDFHGST IQVHIAESKS
101: KEAFDNPTSL NIIAGVGEQD ELDNGAGRGR GRGDGPGKAW QQDGDWMCPN TSCGNVNFAF RGVCNRCGAA RPAGAGGGGG GGGGRGRGRG SSDARGSSRA
201: GAAAAVGGPP GLFGPNDWPC PMCGNINWAK RTKCNICNTS KPGTNEGGVR GGRGGGYKEL DEEELEEVKK RRKEAEEDDG EIYDEFGNLK KKFRSKALHT
301: ESAQALPGSG RAGWEVEHRG SSEREGRERS RDRRRDDYDE KETRNRDRGD HGRDQRRSRS RSRDRERERG RERRRDHEYE RSQERDRDRR HR
101: KEAFDNPTSL NIIAGVGEQD ELDNGAGRGR GRGDGPGKAW QQDGDWMCPN TSCGNVNFAF RGVCNRCGAA RPAGAGGGGG GGGGRGRGRG SSDARGSSRA
201: GAAAAVGGPP GLFGPNDWPC PMCGNINWAK RTKCNICNTS KPGTNEGGVR GGRGGGYKEL DEEELEEVKK RRKEAEEDDG EIYDEFGNLK KKFRSKALHT
301: ESAQALPGSG RAGWEVEHRG SSEREGRERS RDRRRDDYDE KETRNRDRGD HGRDQRRSRS RSRDRERERG RERRRDHEYE RSQERDRDRR HR
001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
Arabidopsis Description
TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.