Factsheet for Os07t0296200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0846900-01
Os02t0654400-01
Os02t0828566-01
Os03t0422702-00
Os03t0441000-01
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Os01t0846900-01	AT1G17440.1	17340043
AT1G50300.1	Os02t0654400-01	AT1G27720.1	17340043
AT1G50300.1	Os03t0441000-01	AT1G27720.1	17340043
AT1G50300.1	Os04t0654700-02	AT1G71230.1	21798944
AT1G50300.1	Os02t0828566-01	AT5G08330.1	21798944
AT1G50300.1	Os03t0422702-00	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0299500-01	Rice	nucleus	36.04	88.75
EER99320	Sorghum	nucleus	82.23	82.65
TraesCS5B01G176600.1	Wheat	nucleus	79.95	80.56
HORVU5Hr1G054500.18	Barley	nucleus	78.68	79.08
Zm00001d021426_P002	Maize	nucleus	77.92	78.72
TraesCS5D01G183400.3	Wheat	nucleus	80.2	77.64
TraesCS5A01G178900.3	Wheat	nucleus	79.44	76.9
KRH62947	Soybean	nucleus	25.38	70.92
Solyc11g040050.1.1	Tomato	nucleus	69.04	69.92
PGSC0003DMT400048896	Potato	nucleus	68.53	69.77
KRH75898	Soybean	nucleus	33.5	68.75
CDY03594	Canola	nucleus	64.47	67.02
AT1G50300.1	Thale cress	nucleus	63.2	66.94
VIT_01s0010g01410.t01	Wine grape	nucleus	70.3	66.91
CDY67548	Canola	nucleus	64.47	66.84
Bra014245.1-P	Field mustard	nucleus	64.21	66.58
KRH24217	Soybean	nucleus	64.47	66.49
KRH29220	Soybean	nucleus	64.72	66.06
CDY42510	Canola	nucleus	64.21	66.06
CDY22787	Canola	nucleus	63.2	66.05
Bra018839.1-P	Field mustard	nucleus	63.2	66.05
GSMUA_Achr8P27040_001	Banana	cytosol	15.99	61.16
GSMUA_Achr8P27030_001	Banana	cytosol	18.27	48.32
GSMUA_Achr6P27180_001	Banana	nucleus	69.04	44.52

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	EntrezGene:4342966	EMBL:AK064362	ProteinID:BAC84891.1
ProteinID:BAF21325.1	ProteinID:BAT01058.1	ncoils:Coil	ProteinID:EEE66996.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os07g0296200	EnsemblPlants:Os07t0296200-01	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358
PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	UniProt:Q6YS82	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI00001BF84B
RefSeq:XP_015646752.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0296200-01);Similar to predicted protein. (Os07t0296200-02)

Coordinates

chr7:-:11592341..11596865

Molecular Weight (calculated)

43293.5 Da

IEP (calculated)

8.148

GRAVY (calculated)

-1.260

Length

394 amino acids

Sequence
(BLAST)

001: MAGFMSRGPP NGSVYVCNLP PGTDETMLAE YFGTIGLLKK DKRTGRPKIW IYRDKVTNEP KGDATVTYED PHAASAAVEW FNNKDFHGST IQVHIAESKN
101: KDMNDSSATA SLNNSAELGG QDELDNGEGR GRGRGDGPGK AWQQDGDWLC PNTSCGNVNF AFRGVCNLCG AARPAGVSGS SAGGGGRGRG RGSDDARGGS
201: RAAAAAAVGG PPGLFGPNDW PCPMCGNINW AKRMKCNICN TTKPGHNEGG VRGGRGGGYK ELDEEELEEV KRRRKEAEED DGEMYDEFGN LKKKFRAKTQ
301: QTENAPTLPG SGRAGWEVEQ RGSTGREGKE RSRDQGRDHD YDERDSRNRD RGSHGRERRR SRDREKERGR DTGRDHSYER SWERGTERDH DRYR

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.