CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90619
KRH05606
KRH06174
KRH15434
KRH36141
KRH47589
KRH52077
KRH52586
KRH61389
KRH61926

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	KRH06174	AT1G17440.1	17340043
AT1G50300.1	KRH47589	AT1G17440.1	17340043
AT1G50300.1	KRH05606	AT1G27720.1	17340043
AT1G50300.1	KRH15434	AT1G27720.1	17340043
AT1G50300.1	KRH52077	AT1G27720.1	17340043
AT1G50300.1	KRH61389	AT1G27720.1	17340043
AT1G50300.1	KRH52586	AT1G71230.1	21798944
AT1G50300.1	KRH61926	AT1G71230.1	21798944
AT1G50300.1	KRG90619	AT5G08330.1	21798944
AT1G50300.1	KRH36141	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75898	Soybean	nucleus	78.01	57.29
KRH24217	Soybean	nucleus	85.82	31.68
KRH29220	Soybean	nucleus	85.11	31.09
Os09t0299500-01	Rice	nucleus	30.5	26.88
AT1G50300.1	Thale cress	nucleus	68.09	25.81
EER99320	Sorghum	nucleus	71.63	25.77
Bra018839.1-P	Field mustard	nucleus	68.79	25.73
CDY22787	Canola	nucleus	68.79	25.73
VIT_01s0010g01410.t01	Wine grape	nucleus	75.18	25.6
CDY03594	Canola	nucleus	68.79	25.59
PGSC0003DMT400048896	Potato	nucleus	70.21	25.58
Bra014245.1-P	Field mustard	nucleus	68.79	25.53
CDY67548	Canola	nucleus	68.79	25.53
Solyc11g040050.1.1	Tomato	nucleus	70.21	25.45
Zm00001d021426_P002	Maize	nucleus	70.21	25.38
Os07t0296200-01	Rice	nucleus	70.92	25.38
CDY42510	Canola	nucleus	68.79	25.33
GSMUA_Achr8P27040_001	Banana	cytosol	18.44	25.24
TraesCS5B01G176600.1	Wheat	nucleus	65.96	23.79
HORVU5Hr1G054500.18	Barley	nucleus	65.96	23.72
TraesCS5A01G178900.3	Wheat	nucleus	65.96	22.85
TraesCS5D01G183400.3	Wheat	nucleus	65.96	22.85
GSMUA_Achr6P27180_001	Banana	nucleus	73.05	16.86
GSMUA_Achr8P27030_001	Banana	cytosol	17.02	16.11

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	UniProt:A0A0R0KFC2	EMBL:ACUP02002463	EnsemblPlantsGene:GLYMA_04G143600
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	InterPro:IPR012677
EnsemblPlants:KRH62947	ProteinID:KRH62947	ProteinID:KRH62947.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00641	ScanProsite:PS01358
PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	SMART:SM00547	SUPFAM:SSF54928
SUPFAM:SSF90209	UniParc:UPI0006ED9FE9	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:26215039..26216181

Molecular Weight (calculated)

15286.3 Da

IEP (calculated)

9.999

GRAVY (calculated)

-0.522

Length

141 amino acids

Sequence
(BLAST)

001: MDKRTGRPKI WLYRDKETNE PKGDATITYE DPHAAVAAVE WFNNNWLCLK KSNCSNVNFA FRGACNRCGI VRPTGASGIL GVGGRGKGRA AQESGGISRP
101: AGGGIFGPND WPCPMCGNIN WAKRTKCNIC NTNKPGIMRV V

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.