Factsheet for Bra018839.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010996.1-P
Bra012474.1-P
Bra024741.1-P
Bra025975.1-P
Bra028662.1-P
Bra030061.1-P
Bra030989.1-P
Bra035030.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G50300.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G50300.1	Bra010996.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra012474.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra024741.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra035030.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra039992.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra030061.1-P	AT1G27720.1	17340043
AT1G50300.1	Bra028662.1-P	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22787	Canola	nucleus	98.67	98.67
Bra014245.1-P	Field mustard	nucleus	90.72	90.0
AT1G50300.1	Thale cress	nucleus	86.21	87.37
KRH62947	Soybean	nucleus	25.73	68.79
KRH75898	Soybean	nucleus	34.48	67.71
PGSC0003DMT400048896	Potato	nucleus	68.7	66.93
Solyc11g040050.1.1	Tomato	nucleus	68.97	66.84
KRH24217	Soybean	nucleus	67.11	66.23
KRH29220	Soybean	nucleus	67.64	66.06
VIT_01s0010g01410.t01	Wine grape	nucleus	71.35	64.98
Zm00001d021426_P002	Maize	nucleus	66.05	63.85
EER99320	Sorghum	nucleus	65.78	63.27
Os07t0296200-01	Rice	nucleus	66.05	63.2
TraesCS5B01G176600.1	Wheat	nucleus	65.52	63.17
HORVU5Hr1G054500.18	Barley	nucleus	65.52	63.01
Os09t0299500-01	Rice	nucleus	26.26	61.88
TraesCS5A01G178900.3	Wheat	nucleus	65.78	60.93
TraesCS5D01G183400.3	Wheat	nucleus	65.25	60.44
GSMUA_Achr8P27040_001	Banana	cytosol	14.85	54.37
GSMUA_Achr8P27030_001	Banana	cytosol	16.71	42.28
GSMUA_Achr6P27180_001	Banana	nucleus	67.9	41.9

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	EnsemblPlantsGene:Bra018839	EnsemblPlants:Bra018839.1	EnsemblPlants:Bra018839.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	UniProt:M4DQP6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209
UniParc:UPI000253EAF9	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

AT1G50300 (E=2e-119) TAF15 | TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA06:+:1673928..1676570

Molecular Weight (calculated)

41542.5 Da

IEP (calculated)

8.996

GRAVY (calculated)

-1.303

Length

377 amino acids

Sequence
(BLAST)

001: MATNGSVYVS NLPLGTDENM LAEYFGTIGL LKRDKRTGTP KVWLYRDKET DEPKGDATVT YEDPHAALAA VEWFNNKEFH GSVIGVFMAQ SKSKSGGDHQ
101: SEGFGFDGGD IASKETNGGG GGRGRGQGDS SAKPWQQDGD WMCPNTSCTN VNFAFRGVCN RCGTARPAGA SGGGMGGGGR GRGRGGGADG GPPGKGASTG
201: LFGPNDWSCP MCGNVNWAKR LKCNVCNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWQVEELGVD RDGRERSRDR QRDRGDKHRD HHNYDKDRRR SRSRERERGG KERDYDYDHG RNRDRDRDYS RGSRYRN

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.