Factsheet for Bra010996.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002763.1-P
Bra003346.1-P
Bra006834.1-P
Bra007407.1-P
Bra008105.1-P
Bra014874.1-P
Bra015983.1-P
Bra020012.1-P
Bra024329.1-P
Bra026114.1-P
Bra028713.1-P
Bra032371.1-P
Bra033870.1-P
Bra035648.1-P
Bra037327.1-P
Bra037797.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	Bra026114.1-P	AT1G15730.1	21798944
AT1G25490.1	Bra014874.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra032371.1-P	AT1G30260.1	21798944
AT1G25490.1	Bra033870.1-P	AT1G31870.1	21798944
AT1G25490.1	Bra008105.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra015983.1-P	AT1G73590.1	17889649
AT1G25490.1	Bra039379.1-P	AT3G13222.1	21798944
AT1G25490.1	Bra003346.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra007407.1-P	AT3G58630.1	21798944
AT1G25490.1	Bra020012.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra037327.1-P	AT4G00231.1	21798944
AT1G25490.1	Bra028713.1-P	AT5G06960.1	21798944
AT1G25490.1	Bra002763.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra006834.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra035648.1-P	AT5G57090.1	17889649
AT1G25490.1	Bra024329.1-P	AT5G64813.1	21798944
AT1G25490.1	Bra037797.1-P	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36104	Canola	cytosol	98.64	98.64
Bra024741.1-P	Field mustard	cytosol	53.06	94.83
Bra012474.1-P	Field mustard	cytosol	94.39	94.71
AT1G25490.1	Thale cress	cytosol	93.88	93.88
Bra039992.1-P	Field mustard	cytosol	20.41	90.23
Bra017348.1-P	Field mustard	cytosol	35.2	79.92
Bra035030.1-P	Field mustard	cytosol	20.24	76.28
Bra025162.1-P	Field mustard	cytosol	56.29	42.99

Protein Annotations

EnsemblPlants:Bra010996.1	EnsemblPlants:Bra010996.1-P	EnsemblPlantsGene:Bra010996	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	InterPro:Vac14_Fab1-bd
PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFAM:PF12755	PFAM:PF13646	PFscan:PS50077	SUPFAM:SSF48371
UniParc:UPI0002545E45	UniProt:M4D3E2	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:

Description

AT1G25490 (E=0.0) RCN1, REGA, ATB BETA BETA, EER1 | RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator

Coordinates

chrA08:+:17496133..17499007

Molecular Weight (calculated)

65364.8 Da

IEP (calculated)

4.795

GRAVY (calculated)

0.137

Length

588 amino acids

Sequence
(BLAST)

001: MAMVDEPLYP IALLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEHAHMILPP LESLCTVEET
101: TVREKAVDSL CKIGSQMKES DLVDSFVPLV KRLAAGKWFA ARVSACGLFH VAYQGCTDVL KTELRSSYGQ LCQDDMPMVR RAAASNLGKF ATTLESAFLN
201: AEIMTMFDGL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTKTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCQL LNPELSIQHI LPCVKELSTD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWMQDKVY SIREAAANNL KRLAEEFGSE WAMQHIVPQV LDMVNNPHYL HRMMALRAIS
501: LMAPVMGSEI TCSKFLPVVV EAAKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALRSI DAAAVAQS

Best Arabidopsis Sequence Match ( AT1G25490.1 )
(BLAST)

001: MAMVDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENSDDD DEVLLAMAEE LGVFIPFVGG IEFAHVLLPP LESLCTVEET
101: CVREKAVESL CKIGSQMKEN DLVESFVPLV KRLAGGEWFA ARVSACGIFH VAYQGCTDVL KTELRATYSQ LCKDDMPMVR RAAASNLGKF ATTVESTFLI
201: AEIMTMFDDL TKDDQDSVRL LAVEGCAALG KLLEPQDCVA RILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDCTRTD LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRL LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPIL GKDSTIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY VPLLASQLGI GFFDDKLGAL CMQWLQDKVY SIREAAANNL KRLAEEFGPE WAMQHLVPQV LDMVNNPHYL HRMMVLRAIS
501: LMAPVMGSEI TCSKFLPVVV EASKDRVPNI KFNVAKLLQS LIPIVDQSVV DKTIRQCLVD LSEDPDVDVR YFANQALNSI DGSTAAQS

Arabidopsis Description

PP2AA1Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38845]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.