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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra005335.1-P
Bra010203.1-P
Bra010572.1-P
Bra011701.1-P
Bra017316.1-P
Bra019707.1-P
Bra023012.1-P
Bra023243.1-P
Bra026388.1-P
Bra039379.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13222.1 Bra019707.1-P AT1G13730.1 21798944
AT3G13222.1 Bra023243.1-P AT1G32150.1 25387999
AT3G13222.1 Bra010203.1-P AT1G33470.1 21798944
AT3G13222.1 Bra005335.1-P AT2G35530.1 25387999
AT3G13222.1 Bra017316.1-P AT2G35530.1 25387999
AT3G13222.1 Bra023012.1-P AT2G35530.1 25387999
AT3G13222.1 Bra039379.1-P AT3G13222.1 21798944
AT3G13222.1 Bra026388.1-P AT4G26990.1 21798944
AT3G13222.1 Bra010572.1-P AT4G36730.1 25387999
AT3G13222.1 Bra011701.1-P AT4G36730.1 25387999
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY43361 Canola nucleus 96.17 65.11
GSMUA_Achr1P09430_001 Banana cytosol 10.71 47.19
AT3G13222.1 Thale cress nucleus 64.03 44.27
Os09t0261400-01 Rice plasma membrane 6.63 32.5
Bra038015.1-P Field mustard nucleus 32.65 21.02
Bra029667.1-P Field mustard nucleus 21.94 10.41
Bra040021.1-P Field mustard nucleus 21.43 10.22
Bra010832.1-P Field mustard nucleus 21.17 10.1
Bra022970.1-P Field mustard nucleus 20.15 9.77
Bra021900.1-P Field mustard nucleus 20.41 9.74
Bra021022.1-P Field mustard nucleus 15.05 9.5
Bra030134.1-P Field mustard nucleus 18.88 9.46
Bra013287.1-P Field mustard nucleus 18.62 9.36
Bra032310.1-P Field mustard nucleus 19.13 8.73
Bra027380.1-P Field mustard nucleus 19.39 8.43
Bra021524.1-P Field mustard nucleus 18.11 8.15
Protein Annotations
MapMan:35.1EnsemblPlantsGene:Bra039379EnsemblPlants:Bra039379.1EnsemblPlants:Bra039379.1-PInterPro:GIP1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0008150GO:GO:0042802GO:GO:0043388GO:GO:0051082UniProt:M4FE58PFAM:PF06972
PANTHER:PTHR12758PANTHER:PTHR12758:SF30SUPFAM:SSF46934InterPro:UBA-like_sfUniParc:UPI000253E938SEG:seg
Description
AT1G55820 (E=1e-066) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1296 (InterPro:IPR009719); BEST Arabidopsis thaliana protein match is: GIP1 (GBF-INTERACTING PROTEIN 1); unfolded protein binding (TAIR:AT3G13222.1); Has 1009 Blast hits to 462 proteins in 111 species: Archae - 0; Bacteria - 42; Metazoa - 245; Fungi - 90; Plants - 135; Viruses - 12; Other Eukaryotes - 485 (source: NCBI BLink).
Coordinates
chrScaffold000164:-:195151..198050
Molecular Weight (calculated)
42723.3 Da
IEP (calculated)
6.005
GRAVY (calculated)
-0.730
Length
392 amino acids
Sequence
(BLAST)
001: MTTSNGGDVG SRVSIPADLL ETFQNIREYT GKQHSDEDIF SVFKDCLNDP HETAQKLLFL DTFHEVKGKR ERKKESLVPK TEDKGRNGRR NFASNYSGAN
101: NGRSGAFTRQ SGSNHRTRRP MKYETVPVSN FVVQNGTQCA VDGTSKSSQQ SSTSSQRSAT SNCGSQSDQV IRSESAGPKG NNQSLLKSDV GERPHVTFPA
201: HLQVAKMLEN GLTFGSFDSN FVKETCCDNR TFGCDDSIIK SSHGTAVYGA SDRKDISTFS QDDNEISNSA PETELALQSN QTVQLVEGSE VDKLNEESLP
301: IKDIHQVGYV PEAPTQSHSL ANLQASAMYN LSLQGQPLPF PTLHAGFTGI YQQTPPILQA PTISPVTEQP IGPPLVTNQQ PQAAPTNMDN NY
Best Arabidopsis Sequence Match ( AT1G55820.1 )
(BLAST)
001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY
Arabidopsis Description
GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.