Factsheet for Bra026388.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012415.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	Bra012415.1-P	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29262	Canola	nucleus	92.95	93.15
CDX89288	Canola	nucleus	89.53	89.91
AT4G26990.1	Thale cress	plasma membrane	64.32	63.5
KRH46148	Soybean	plastid	16.88	36.92
KRG98802	Soybean	nucleus	32.69	30.91
GSMUA_Achr3P23200_001	Banana	plastid	8.33	28.89
VIT_19s0090g00300.t01	Wine grape	nucleus	34.4	28.0
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	29.49	27.22
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	28.63	26.48
KRH46146	Soybean	nucleus, plastid	14.74	24.04
Os04t0625900-01	Rice	plastid	23.08	23.89
Zm00001d002243_P004	Maize	mitochondrion	23.08	23.79
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	21.37	23.58
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	22.22	23.48
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	22.65	23.25
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	18.8	20.0
HORVU2Hr1G106820.1	Barley	cytosol	18.59	19.82
Bra037969.1-P	Field mustard	cytosol	17.95	14.14
Bra014367.1-P	Field mustard	cytosol	15.38	13.38
Bra021526.1-P	Field mustard	cytosol	17.73	12.95
Bra001533.1-P	Field mustard	nucleus	18.16	8.26

Protein Annotations

EnsemblPlants:Bra026388.1	EnsemblPlants:Bra026388.1-P	EnsemblPlantsGene:Bra026388	Gene3D:2.30.30.100	InterPro:LSM_dom_sf	InterPro:SM_dom_ATX
PANTHER:PTHR12854	PANTHER:PTHR12854:SF12	PFAM:PF14438	SEG:seg	SUPFAM:SSF50182	UniParc:UPI000254575A
UniProt:M4EC79	MapMan:35.2	:	:	:	:

Description

AT4G26990 (E=2e-163) | unknown protein

Coordinates

chrA01:-:9608119..9610974

Molecular Weight (calculated)

50262.0 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.294

Length

468 amino acids

Sequence
(BLAST)

001: MGFERKLEDD KNSTLLIATM CIIGSQVHVH VKDGSVFSGL FYTASVDNGF GIVLKNARIT KKGKSKANVA SGSVVETLVI TSSNIVQIVA EGVSLPSNVT
101: GNYEVANVGS ATETLLPSEP RFSAANKSKN NCFEGRRNHH VRRAGAKILN PSEKVPDVRQ LDNVDIQSSS SSLDSMSERV KPIEEDKLVM EPLSNGCHDA
201: AERPSSTDNS SSQSTAVDET SGLCQGLEAP PNEPAPIQAV KKAKEFMLNP EAKTFSPSYT KRLSPAPTAM PDIGNVAYIP NNTPMLHVPE AVYPNLGNNP
301: YMPQTSLSSK FVPYGNLTAG NAVGVPFPQH MIGPTVNKAQ PQTFTSPYQS VEASPMFVNP NPQVMVARSG QFVFAQPLSQ NLVQGTPPLP PPMLSRPLPP
401: PQHVQYLKHQ GVVASGHPLQ LCVSQPFMTA GLQPYSVPAQ FPVMQPPFPT NQPMPVAVPN GFFGTFHK

Best Arabidopsis Sequence Match ( AT4G26990.1 )
(BLAST)

001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP

Arabidopsis Description

AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.