Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39090 | Canola | cytosol | 87.52 | 85.13 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 62.87 | 66.83 |
| Bra014367.1-P | Field mustard | cytosol | 47.11 | 56.13 |
| Bra037969.1-P | Field mustard | cytosol | 46.49 | 50.17 |
| KRH23258 | Soybean | cytosol | 43.37 | 43.44 |
| KRH10084 | Soybean | nucleus | 43.06 | 42.99 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 41.19 | 41.84 |
| KRH47566 | Soybean | plastid | 40.09 | 40.66 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 34.79 | 40.4 |
| Solyc06g062860.2.1 | Tomato | cytosol | 39.16 | 40.29 |
| KRH06143 | Soybean | cytosol, plastid | 39.31 | 40.13 |
| Bra001533.1-P | Field mustard | nucleus | 63.81 | 39.75 |
| PGSC0003DMT400012530 | Potato | nucleus | 12.48 | 39.6 |
| Solyc03g121950.2.1 | Tomato | plastid | 38.85 | 39.34 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 35.1 | 38.01 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 34.63 | 37.76 |
| OQU84946 | Sorghum | nucleus | 34.63 | 36.69 |
| Os02t0480900-01 | Rice | nucleus | 33.39 | 36.21 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 35.41 | 34.92 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 34.79 | 34.63 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 34.17 | 33.54 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 33.07 | 33.39 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 32.61 | 32.86 |
| Bra026388.1-P | Field mustard | nucleus | 12.95 | 17.73 |
Protein Annotations
| EnsemblPlants:Bra021526.1 | EnsemblPlants:Bra021526.1-P | EnsemblPlantsGene:Bra021526 | Gene3D:2.30.30.100 | InterPro:Ataxin-2_C | InterPro:LsmAD_domain |
| InterPro:SM_dom_ATX | ncoils:Coil | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF07145 |
| PFAM:PF14438 | SEG:seg | SMART:SM01272 | UniParc:UPI0002544558 | UniProt:M4DYD0 | MapMan:35.1 |
Description
AT3G14010 (E=3e-158) CID4 | CID4 (CTC-Interacting Domain 4); protein binding
Coordinates
chrA01:-:24737753..24741747
Molecular Weight (calculated)
70101.4 Da
IEP (calculated)
5.449
GRAVY (calculated)
-0.786
Length
641 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLLAPDLYS ILRDPSFLRV IGVDVVIQMV DLGFEAGMNM QPGLPSKAST NGSPYIRGGE REGVLNKAKS IKSHPANAAS NGEAGSLKGD SRDGLVYLTT
101: CKIGHLVEVH LKNGSVYSGI FHAADVEKDF GIILKMASLI KDGGLRGHKA RSEFVRKPPS KTFIIPADEL VQVIAKDLSI SSDGMSNAVQ SEKSGELLTD
201: SSISKSFHTD QGRELKPWIP DGDVPQGLDN VFDDPWKRGW DQFKVNESLF GVKSTFDEEI YTTKLDRGIR TREMEERAQR IAREIEGENT RDLHVAEERG
301: FQLNEKFDID EESKYSAVLP ADAFDDSGFD EEDDELLDTC NDETFGGSST STVQKPVSSS GKGYGELRDA SQPSRNNTNV DQMCSISDDH AQHLPSEQRS
401: KDFTAPGSSI SESQMGERRN KNNPEFSHSN RSAEESVSGH GDSKEGAKLG GGGTSAWKTV AEKERQVSEV SGKPKSESFT GQSASRRSSE SRPGPSTSSR
501: PGLSPSSSIG SLSSSEKSTL NPNAKEFKLN PNAKSFKPTA AARPQSPMAD ASFYYPAAPA PVQQMPGMPL GYGIQPQYPG QQQMIYYPGH QHPQAFYPPN
601: AQPQFPQQQQ QMMMGRQPRP QMVYMPPPPY QPDNPYNQGR E
101: CKIGHLVEVH LKNGSVYSGI FHAADVEKDF GIILKMASLI KDGGLRGHKA RSEFVRKPPS KTFIIPADEL VQVIAKDLSI SSDGMSNAVQ SEKSGELLTD
201: SSISKSFHTD QGRELKPWIP DGDVPQGLDN VFDDPWKRGW DQFKVNESLF GVKSTFDEEI YTTKLDRGIR TREMEERAQR IAREIEGENT RDLHVAEERG
301: FQLNEKFDID EESKYSAVLP ADAFDDSGFD EEDDELLDTC NDETFGGSST STVQKPVSSS GKGYGELRDA SQPSRNNTNV DQMCSISDDH AQHLPSEQRS
401: KDFTAPGSSI SESQMGERRN KNNPEFSHSN RSAEESVSGH GDSKEGAKLG GGGTSAWKTV AEKERQVSEV SGKPKSESFT GQSASRRSSE SRPGPSTSSR
501: PGLSPSSSIG SLSSSEKSTL NPNAKEFKLN PNAKSFKPTA AARPQSPMAD ASFYYPAAPA PVQQMPGMPL GYGIQPQYPG QQQMIYYPGH QHPQAFYPPN
601: AQPQFPQQQQ QMMMGRQPRP QMVYMPPPPY QPDNPYNQGR E
001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.