Factsheet for HORVU6Hr1G003890.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G028800.1	Wheat	nucleus	87.11	94.76
TraesCS6D01G024600.2	Wheat	nucleus	84.63	92.69
TraesCS6A01G022300.1	Wheat	nucleus	76.09	88.77
OQU84946	Sorghum	nucleus	65.37	69.59
Os02t0480900-01	Rice	nucleus	62.42	68.02
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	62.89	63.78
Zm00001d016496_P004	Maize	cytosol, plastid	60.4	59.57
GSMUA_Achr6P06300_001	Banana	mitochondrion	40.22	39.85
VIT_09s0002g01560.t01	Wine grape	nucleus	38.66	39.46
GSMUA_Achr7P11380_001	Banana	mitochondrion	38.51	38.99
KRH10084	Soybean	nucleus	38.82	38.94
KRH23258	Soybean	cytosol	38.66	38.91
CDY08218	Canola	cytosol	32.61	38.75
CDY26136	Canola	cytosol	31.83	38.61
Bra014367.1-P	Field mustard	cytosol	31.99	38.29
KRH06143	Soybean	cytosol, plastid	36.34	37.26
AT3G14010.5	Thale cress	nucleus, plastid	34.32	36.65
PGSC0003DMT400012530	Potato	nucleus	11.49	36.63
Solyc06g062860.2.1	Tomato	cytosol	35.4	36.6
KRH47566	Soybean	plastid	35.87	36.55
Solyc03g121950.2.1	Tomato	plastid	35.87	36.49
AT1G54170.1	Thale cress	nucleus	32.92	36.12
Bra021526.1-P	Field mustard	cytosol	34.63	34.79
CDY33254	Canola	extracellular	34.47	34.69
CDY51396	Canola	cytosol	31.83	34.45
CDY33083	Canola	nucleus	31.68	34.29
Bra037969.1-P	Field mustard	cytosol	31.37	34.01
CDY39090	Canola	cytosol	33.23	32.47
CDX82502	Canola	nucleus	30.9	19.4
Bra001533.1-P	Field mustard	nucleus	30.75	19.24
CDX75744	Canola	golgi, plastid, vacuole	30.75	17.44
HORVU2Hr1G106820.1	Barley	cytosol	8.23	12.07

Protein Annotations

EnsemblPlants:HORVU6Hr1G003890.1	EnsemblPlantsGene:HORVU6Hr1G003890	Gene3D:2.30.30.100	InterPro:LsmAD_domain	InterPro:SM_dom_ATX	ncoils:Coil
PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF14438	SEG:seg	SMART:SM01272
UniParc:UPI000B474DB9	UniProt:A0A287T6H5	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:8449061..8457830

Molecular Weight (calculated)

69690.2 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.793

Length

644 amino acids

Sequence
(BLAST)

001: IRSLSLPLPA RARLLPPPPP AARVPAAADP PASSPRVRSG PPAPRSPEPH RPAAAGMMSR QQQHAPLRTS ANGAPHRKLD REGSGRHDSK SHLMRSSSGG
101: FTSAENGGKL GHASPSRDRL VYVMTQIIGH HVDVHVKNGS VISGIFHATN TDKDFGIVLK MAQPIKDTSV GGQINPTDVV RKPETMIIPA RELVQVFAKD
201: VTLGGDELPK GPIHDKRKDL MIDSAISRSH FPEERELERW APDEGDSDCI ELEKFDRKGH RSWDQFETNA ALFGVKSTFN EDLYTTKLER GPHMRELEKH
301: ASRIAREIEG EDTEDLHLAE ERGLYLDEDL EHDEEIKYSA VRRDTDTTVK PFTNVPSRPG SIDTKDLPVC SSTMDDKSSS HIFGGTHLSA TAATGELASE
401: YQSNKLLPAD ANRLEGKRSK DSSGDKDSRI LQPENTLPEG GRPLISEDLE GAPSRSRASE PSSSGQGNKS SDGSTPDSTL PSKFPSTNSS QRPGSSTPLT
501: SERVAANSAA SAAPGLSPSS SMGSLSSDKS SLNPNAKEFK LNPNAKSFTP VTSPRPPFPP APDATYYYPN NMGATPGPGL PVGMGFPQAY GGQPVVYNAQ
601: PGSSPQGYMH PSGQQYGQQM MMGQTRPVYY YAPEMQQQYR GRNF

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.