Factsheet for GSMUA_Achr7P11380_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P04510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	GSMUA_Achr4P04510_001	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06300_001	Banana	mitochondrion	59.75	58.46
TraesCS6A01G022300.1	Wheat	nucleus	38.21	44.02
Os02t0480900-01	Rice	nucleus	40.09	43.15
OQU84946	Sorghum	nucleus	39.78	41.82
TraesCS6B01G028800.1	Wheat	nucleus	38.84	41.72
TraesCS6D01G024600.2	Wheat	nucleus	38.36	41.5
VIT_09s0002g01560.t01	Wine grape	nucleus	41.04	41.36
KRH10084	Soybean	nucleus	41.51	41.12
KRH23258	Soybean	cytosol	41.04	40.78
KRH06143	Soybean	cytosol, plastid	40.09	40.61
PGSC0003DMT400012530	Potato	nucleus	12.89	40.59
KRH47566	Soybean	plastid	40.25	40.51
Solyc03g121950.2.1	Tomato	plastid	39.62	39.81
Bra014367.1-P	Field mustard	cytosol	32.86	38.85
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.52	38.58
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	38.99	38.51
Solyc06g062860.2.1	Tomato	cytosol	37.58	38.36
CDY26136	Canola	cytosol	31.76	38.04
CDY08218	Canola	cytosol	32.23	37.82
Zm00001d016496_P004	Maize	cytosol, plastid	37.42	36.45
AT1G54170.1	Thale cress	nucleus	32.55	35.26
AT3G14010.5	Thale cress	nucleus, plastid	33.02	34.83
Bra037969.1-P	Field mustard	cytosol	31.92	34.18
CDY51396	Canola	cytosol	31.45	33.61
CDY33083	Canola	nucleus	31.29	33.45
Bra021526.1-P	Field mustard	cytosol	32.86	32.61
CDY33254	Canola	extracellular	32.7	32.5
CDY39090	Canola	cytosol	32.55	31.41
GSMUA_Achr3P23200_001	Banana	plastid	6.13	28.89
CDX82502	Canola	nucleus	30.19	18.71
Bra001533.1-P	Field mustard	nucleus	30.19	18.66
CDX75744	Canola	golgi, plastid, vacuole	30.97	17.36

Protein Annotations

EnsemblPlants:GSMUA_Achr7P11380_001	EnsemblPlants:GSMUA_Achr7T11380_001	EnsemblPlantsGene:GSMUA_Achr7G11380_001	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LsmAD_domain
InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
SEG:seg	SMART:SM01272	UniParc:UPI000295B9D9	UniProt:M0TGM6	MapMan:35.1	:

Description

ataxin-2 related protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G11380_001]

Coordinates

chr7:-:9074325..9080147

Molecular Weight (calculated)

69737.0 Da

IEP (calculated)

5.388

GRAVY (calculated)

-0.581

Length

636 amino acids

Sequence
(BLAST)

001: MSSQKLMQRM NLQQGRPFAN GYSSRRVDTV VGTRTESKTQ VRKSASPNFV STNGTRVGRP TSPSRDRLIY VLTCLVGHHV EVHVKNGSII SGIFHATNAD
101: GDFEIVLKMA QVIKDGSVRE RKSDHDSIKK PQPMVIPARE LVQVLAKDVS LSDEFTPGQS CEKRKDLMID SVISHSHHLE TERELAPWMP GEDDPECPEL
201: ENIFDGTFDR KWDQFETNEA LFGVKSTFNE ELYTTKLERG PQMRDLEKIA LKIAREIEGE ETQDLHLAEE RGFSYHDDFN LDEESRYSAV RREVNGSGLR
301: ENENSDMEAY GSGIIAGSLG LATSGSCSDS LSKKNGNEAQ ASCNETQASS TSSSVVNTKH QQIFVFFSAD INGFKIHHTI CVEHVEEACL YTLADKGLGL
401: SSVDVSSELK SDCIARSSSL EDEIRLDDNQ IKDQGGKSEH VNTSIKSEEV SISAPLYDPS SSGQGNIITE SSDSPVRGKL PAASESVDPP IRQGSSTSSS
501: EYAHAESNRP FLSPSTSCGS LSSEKSTLNP NAKEFKLNPN AKSFTPSSSV RLHAAIPDGS FYQASNVNAV QHMHGLPMGV GVGPSFSHQP VFYNPQAAQI
601: QSPQAYINPN GPVYGQQMIV GQHPQFYYVQ SYPPVS

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.