CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG25180

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	KXG25180	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	87.44	83.31
Os02t0480900-01	Rice	nucleus	70.25	71.91
TraesCS6D01G024600.2	Wheat	nucleus	68.76	70.75
TraesCS6B01G028800.1	Wheat	nucleus	69.09	70.61
TraesCS6A01G022300.1	Wheat	nucleus	62.81	68.84
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	69.59	65.37
VIT_09s0002g01560.t01	Wine grape	nucleus	43.64	41.84
KRH23258	Soybean	cytosol	43.31	40.94
KRH10084	Soybean	nucleus	43.14	40.65
GSMUA_Achr6P06300_001	Banana	mitochondrion	42.98	40.0
GSMUA_Achr7P11380_001	Banana	mitochondrion	41.82	39.78
CDY26136	Canola	cytosol	34.38	39.17
CDY08218	Canola	cytosol	34.55	38.56
Bra014367.1-P	Field mustard	cytosol	34.21	38.48
PGSC0003DMT400012530	Potato	nucleus	12.73	38.12
KRH47566	Soybean	plastid	39.67	37.97
Solyc06g062860.2.1	Tomato	cytosol	39.01	37.88
KRH06143	Soybean	cytosol, plastid	39.17	37.74
Solyc03g121950.2.1	Tomato	plastid	39.01	37.28
AT3G14010.5	Thale cress	nucleus, plastid	37.02	37.15
CDY51396	Canola	cytosol	35.7	36.3
AT1G54170.1	Thale cress	nucleus	34.71	35.78
Bra037969.1-P	Field mustard	cytosol	34.71	35.35
CDY33083	Canola	nucleus	34.55	35.13
Bra021526.1-P	Field mustard	cytosol	36.69	34.63
CDY33254	Canola	extracellular	36.36	34.38
CDY39090	Canola	cytosol	35.21	32.32
Bra001533.1-P	Field mustard	nucleus	32.23	18.95
CDX82502	Canola	nucleus	32.07	18.91
CDX75744	Canola	golgi, plastid, vacuole	32.89	17.53
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	11.74	15.57

Protein Annotations

EnsemblPlants:OQU84946	EnsemblPlantsGene:SORBI_3004G146500	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LsmAD_domain	InterPro:SM_dom_ATX
PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438	ProteinID:OQU84946
ProteinID:OQU84946.1	SEG:seg	SMART:SM01272	UniParc:UPI000B8BAE49	UniProt:A0A1Z5RNJ3	MapMan:35.1

Description

hypothetical protein

Coordinates

chr4:-:45418114..45427846

Molecular Weight (calculated)

66506.2 Da

IEP (calculated)

6.777

GRAVY (calculated)

-0.817

Length

605 amino acids

Sequence
(BLAST)

001: MMSHQQQIAP PSRGSVNGFP HRKLDREGSG RHESKINLVR SSSGGFTNSE NGIKLGHGSH SRDRLIYVLT QLIGHHVDVH VKNGSIISGI FHATNSDKDF
101: GVVLKMAQVI KDGSARGQRY SDDVVKKPET MIIPARELVQ VFAKDVALGG DELAKGPGHD KRKDLLIDSA ISRSHYLEER ELERWAPDEG DSECIELEKY
201: DRKGNRSWDQ FETNAALFGV KSTFNEEIYT TKLERGPHMR ELEKHALKIA REIEGEDTKD THLAEERGLF LGDDLDHDEE IKYSAVRRDS DNSKYKPPFA
301: KIPSSTCHVD SFNRTVNIDP KDSLACSSKM DEESSSHIFD DTDASATIQT NSVSQPTSDY LSDRPLSNHA HRLDRKLSKE SNEKMDNRKL QPESNLSDGA
401: RPLISEGLDG RPSSSHAYEP SSSGQAFKSR ETPDLTVSVK HPSATEPVTS SQRPGSSTSS TSERIAANSA ASAPGLSPSS SIGSLTSEKS TLNPNAKEFK
501: LNPNAKSFTP SASLRPPHPT SSDASYYYPN NMPAAPLGPG LPVGMGFPPA YGAQPVMYNT QPGASPQGYM HPAGPQYGQQ MMMGGQTRPV YYYAPEMQQY
601: RGRNF

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.