Factsheet for Zm00001d053245_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 3
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032249_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	Zm00001d032249_P002	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84946	Sorghum	nucleus	83.31	87.44
Os02t0480900-01	Rice	nucleus	64.88	69.71
Zm00001d016496_P004	Maize	cytosol, plastid	70.87	68.91
TraesCS6D01G024600.2	Wheat	nucleus	62.68	67.69
TraesCS6B01G028800.1	Wheat	nucleus	62.68	67.23
TraesCS6A01G022300.1	Wheat	nucleus	57.8	66.49
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	63.78	62.89
VIT_09s0002g01560.t01	Wine grape	nucleus	39.69	39.94
KRH10084	Soybean	nucleus	39.37	38.94
GSMUA_Achr6P06300_001	Banana	mitochondrion	39.69	38.77
KRH23258	Soybean	cytosol	39.06	38.75
GSMUA_Achr7P11380_001	Banana	mitochondrion	38.58	38.52
CDY26136	Canola	cytosol	31.5	37.66
CDY08218	Canola	cytosol	31.81	37.27
Bra014367.1-P	Field mustard	cytosol	31.18	36.8
KRH06143	Soybean	cytosol, plastid	36.38	36.78
KRH47566	Soybean	plastid	36.54	36.71
PGSC0003DMT400012530	Potato	nucleus	11.65	36.63
Solyc06g062860.2.1	Tomato	cytosol	35.59	36.28
AT3G14010.5	Thale cress	nucleus, plastid	33.7	35.49
Solyc03g121950.2.1	Tomato	plastid	35.12	35.23
AT1G54170.1	Thale cress	nucleus	32.28	34.92
CDY51396	Canola	cytosol	32.44	34.62
Bra037969.1-P	Field mustard	cytosol	31.65	33.84
CDY33083	Canola	nucleus	31.65	33.78
Bra021526.1-P	Field mustard	cytosol	33.39	33.07
CDY33254	Canola	extracellular	33.23	32.97
CDY39090	Canola	cytosol	32.13	30.96
CDX82502	Canola	nucleus	29.45	18.23
Bra001533.1-P	Field mustard	nucleus	29.45	18.17
CDX75744	Canola	golgi, plastid, vacuole	30.24	16.92
Zm00001d002243_P004	Maize	mitochondrion	10.71	14.98
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	9.45	14.15

Protein Annotations

EnsemblPlants:Zm00001d053245_P001	EnsemblPlants:Zm00001d053245_T001	EnsemblPlantsGene:Zm00001d053245	EntrezGene:103654662	Gene3D:2.30.30.100	InterPro:Ataxin-2_C
InterPro:LsmAD_domain	InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145
PFAM:PF14438	ProteinID:AQK59021.1	SEG:seg	SMART:SM01272	UniParc:UPI0008450A70	UniProt:A0A1D6QMZ5
MapMan:35.1	:	:	:	:	:

Description

Polyadenylate-binding protein-interacting protein 3

Coordinates

chr4:-:221815416..221833216

Molecular Weight (calculated)

70015.7 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.668

Length

635 amino acids

Sequence
(BLAST)

001: MMSHQQQIAP PSRGSVNGFP HLKLDRVGSG RHESKIVRSS SGGFTNSGND IKLGHGSHSR DRLIYVLTQL IGHHVNVHVK NGSIISGIFH ATNSDKDFGV
101: VLKMAQVIKD GSARGQRFAS DVVKKPETMI IPARELDVAL GGDELPKGPG HDKRKDLLID SAISRSHYLE ERELERWAPD EGDSECIELE KYDRKGNRSW
201: DQFETNAALF GVKSTFNEEI YTTKLERGPH MRELEKHASR IAREIEGEDT KDIHLAEERG LFLGDDLDHD EEIKYSAVRR DTDNSKYKPP FTNVPSSTYQ
301: VDLFNRTVNI VPKDLLGCSS TMDEESSSHI FDDIDASATI QTNSVRQPTS DYLPDRLSSN DENRLDRKLS KGSNENMDKR KLQPENNLSD GARPLISEGS
401: DGPPSSSYAY EPSSSGQGFK SPETPDLTVS VKHPSKTEHV INSQRPGSST SSTSERIAAN SAASALGLSP SSSIGSLTSE KSTLNPNAKE FKLNPNAKSF
501: TPSASLRPPH PASSDASYYY TNNIPAAPLG PGLPVGMGVS LCITLSFSCL FFESLQIFTE TSRLSCPFFL SKYLMFPPAY GTQPVMYNAQ PGASQQGYMH
601: PVGLQYGQQM MMGGGQNRPV YYYAPEMQQY RGRNF

Best Arabidopsis Sequence Match ( AT3G14010.1 )
(BLAST)

001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.