Factsheet for GSMUA_Achr6P06300_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P04510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	GSMUA_Achr4P04510_001	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P11380_001	Banana	mitochondrion	58.46	59.75
TraesCS6A01G022300.1	Wheat	nucleus	39.23	46.2
Os02t0480900-01	Rice	nucleus	40.31	44.33
PGSC0003DMT400012530	Potato	nucleus	13.69	44.06
TraesCS6D01G024600.2	Wheat	nucleus	39.38	43.54
TraesCS6B01G028800.1	Wheat	nucleus	39.54	43.41
OQU84946	Sorghum	nucleus	40.0	42.98
VIT_09s0002g01560.t01	Wine grape	nucleus	41.23	42.47
CDY08218	Canola	cytosol	35.08	42.07
KRH10084	Soybean	nucleus	41.38	41.9
KRH23258	Soybean	cytosol	41.08	41.72
Bra014367.1-P	Field mustard	cytosol	34.46	41.64
CDY26136	Canola	cytosol	34.0	41.62
KRH06143	Soybean	cytosol, plastid	39.69	41.08
KRH47566	Soybean	plastid	39.38	40.51
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	39.85	40.22
Solyc03g121950.2.1	Tomato	plastid	38.92	39.97
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.77	39.69
Solyc06g062860.2.1	Tomato	cytosol	37.38	39.0
AT1G54170.1	Thale cress	nucleus	35.08	38.84
Zm00001d016496_P004	Maize	cytosol, plastid	38.31	38.13
AT3G14010.5	Thale cress	nucleus, plastid	34.62	37.31
CDY33083	Canola	nucleus	33.69	36.81
CDY51396	Canola	cytosol	33.08	36.13
Bra037969.1-P	Field mustard	cytosol	32.77	35.86
Bra021526.1-P	Field mustard	cytosol	34.92	35.41
CDY33254	Canola	extracellular	34.77	35.31
CDY39090	Canola	cytosol	33.69	33.23
GSMUA_Achr3P23200_001	Banana	plastid	6.15	29.63
Bra001533.1-P	Field mustard	nucleus	31.08	19.63
CDX82502	Canola	nucleus	30.77	19.49
CDX75744	Canola	golgi, plastid, vacuole	32.0	18.33

Protein Annotations

EnsemblPlants:GSMUA_Achr6P06300_001	EnsemblPlants:GSMUA_Achr6T06300_001	EnsemblPlantsGene:GSMUA_Achr6G06300_001	Gene3D:2.30.30.100	InterPro:LsmAD_domain	InterPro:SM_dom_ATX
ncoils:Coil	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF14438	SEG:seg
SMART:SM01272	UniParc:UPI000295261E	UniProt:M0T4M8	MapMan:35.1	:	:

Description

ataxin-2 related protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G06300_001]

Coordinates

chr6:+:4246514..4256212

Molecular Weight (calculated)

71418.5 Da

IEP (calculated)

5.646

GRAVY (calculated)

-0.536

Length

650 amino acids

Sequence
(BLAST)

001: MHQSRASGKT LLSPVPNLAR NVFIVGPFVL FKLEERTWSS AIHLLASLQE VGICRISTGA SIEVPIVEEI NTMNSQQGRP SANGYNHRRV DTVTGSRMDS
101: KMQSRKSAFP SFGSSNGIKA GRVTSPSRDR LTYVLTCLVG HRVEVHVKNG SIISGIFHAT NADKDFEIVL KMAQVVNDGS VREQKSVHDT IKTPQPMIIP
201: ARELVQVLAK DVSLSSDEFT SGHAREKRKD LMIDSVISHS HHMEMERQLA PWMPDEDDPD CPELDNIFDG TLDRNWDQFE TNETLFGVKS TFNEELYTTK
301: LERGPQMKEL ERAASRIARE IEGEETHDFH LAEERGFYSH DDFGLDEESK YSAVRREAND SGFREKKKSG NEAQASYVET QATSSSVDEE MDLHFLADKD
401: LGLSSVNHNT ELMSNSISWS SPSLDVDIRL DANQIKDQAI QESQASDDKH LSTESEGLSL SATLSDPSSC NQGNIITEPS DSPVLGKLPA ASKPIDPPIR
501: LGGSAEHACA DSALSHPCLS PSSSCGSLSS DKSTLNPNAK EFKLNPNAKS FTPLSSMRLH TAVSDGSIYY PSNATAVPHM HGLPIGVGVG PSFGHQPVLY
601: NPQAAPMQSS QAYVHPSGPM YGQQMIVGQP PQFYYVQSYP PEMPQKGRKF

Best Arabidopsis Sequence Match ( AT3G14010.4 )
(BLAST)

001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK EGAKSGGGAS
401: SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP PQSPIADASF
501: YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQV

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.