CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39002
KRH48713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	KRH39002	AT5G16560.1	21798944
AT1G54170.1	KRH48713	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47566	Soybean	plastid	89.33	88.77
KRH10084	Soybean	nucleus	71.82	70.25
KRH23258	Soybean	cytosol	71.5	70.16
VIT_09s0002g01560.t01	Wine grape	nucleus	57.32	57.05
Solyc03g121950.2.1	Tomato	plastid	50.16	49.76
Solyc06g062860.2.1	Tomato	cytosol	48.25	48.64
PGSC0003DMT400012530	Potato	nucleus	15.29	47.52
CDY08218	Canola	cytosol	39.33	45.57
Bra014367.1-P	Field mustard	cytosol	38.53	44.98
CDY26136	Canola	cytosol	37.58	44.44
AT1G54170.1	Thale cress	nucleus	39.65	42.42
TraesCS6A01G022300.1	Wheat	nucleus	36.62	41.67
Os02t0480900-01	Rice	nucleus	38.53	40.95
AT3G14010.5	Thale cress	nucleus, plastid	39.17	40.8
CDY51396	Canola	cytosol	38.06	40.17
CDY33083	Canola	nucleus	38.06	40.17
GSMUA_Achr7P11380_001	Banana	mitochondrion	40.61	40.09
GSMUA_Achr6P06300_001	Banana	mitochondrion	41.08	39.69
TraesCS6B01G028800.1	Wheat	nucleus	37.26	39.53
Bra037969.1-P	Field mustard	cytosol	37.26	39.39
CDY33254	Canola	extracellular	40.13	39.38
Bra021526.1-P	Field mustard	cytosol	40.13	39.31
TraesCS6D01G024600.2	Wheat	nucleus	36.78	39.29
OQU84946	Sorghum	nucleus	37.74	39.17
CDY39090	Canola	cytosol	38.38	36.57
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.78	36.38
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	37.26	36.34
Zm00001d016496_P004	Maize	cytosol, plastid	36.94	35.53
Bra001533.1-P	Field mustard	nucleus	35.03	21.38
KRH46146	Soybean	nucleus, plastid	9.71	21.25
CDX82502	Canola	nucleus	34.71	21.25
CDX75744	Canola	golgi, plastid, vacuole	34.71	19.21
KRG98802	Soybean	nucleus	13.54	17.17
KRH46148	Soybean	plastid	3.66	10.75

Protein Annotations

EntrezGene:100778053	Gene3D:2.30.30.100	MapMan:35.1	EMBL:ACUP02009815	ncoils:Coil	EnsemblPlantsGene:GLYMA_16G005700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0010494	GO:GO:0010603
GO:GO:0016043	GO:GO:0034063	UniProt:K7MEE8	EnsemblPlants:KRH06143	ProteinID:KRH06143	ProteinID:KRH06143.1
InterPro:LsmAD_domain	PFAM:PF06741	PFAM:PF14438	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	SMART:SM01272
InterPro:SM_dom_ATX	UniParc:UPI0002957814	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:-:417716..425978

Molecular Weight (calculated)

68367.2 Da

IEP (calculated)

5.477

GRAVY (calculated)

-0.647

Length

628 amino acids

Sequence
(BLAST)

001: MNLQQIGQPK SSNGYGHQKS EKEGATKSDN KLPSVKSNSS SRLAGTGVVT GNKGGGYGSP SHDRLVYLTT CLIGQHVEVQ VKNGSIYSGI FHATNSDKDF
101: GIILKMARLT KAASLQGQGS GVEFVSEAPS KTLIIPANDL AQVIAKDVAV SRDGLPSESH YDMHHEIMVD SVISQSCHVE TGRELQRWVP DEDDQQCPEL
201: ENIFDGPWNR GWDQFETNEM LFGVKSTFNE DFYTTKLEIG PQTRELEKQA LRIAREIEGE ETQDLHLAEE RGLYHNFDID EETRFSSVYR GKGVDDSGYD
301: ENEDRLLDSH NSETFDNIYG LVNKSPGEAS GRKGSNGAQT WSNFSSVFHA QNHSELSQSS SGVDLCRSGS KDHAKQLSSE LPALSCSFSD GESRIQLNSV
401: NNLHGVNDNT VEENWIQAED VQLLKSEDLQ SSLKLKKDGS DEGGLSTNVA LCAPSTRILS KTPKETGSVG ESKSVISRGR LGRSLGSDYV AATSGPGLSP
501: SSSVGSLSSE KSTLNPNAKE FRLNPNAKSF IPSQSHARPR SPMSDGSFYF PATVSTIPNM PAMSMGIGVG TTFAGPQPVV YNPQAAQMPS QPYFHPNGPQ
601: YGQLLGHPRQ VLYMPSYLPE MPYKGRDH

Best Arabidopsis Sequence Match ( AT3G14010.1 )
(BLAST)

001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.