Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82502 | Canola | nucleus | 97.18 | 97.47 |
| Bra021526.1-P | Field mustard | cytosol | 39.75 | 63.81 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 32.94 | 56.22 |
| Bra014367.1-P | Field mustard | cytosol | 24.98 | 47.77 |
| Bra037969.1-P | Field mustard | cytosol | 25.07 | 43.43 |
| KRH23258 | Soybean | cytosol | 23.81 | 38.28 |
| KRH10084 | Soybean | nucleus | 23.23 | 37.23 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 21.96 | 35.82 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 19.05 | 35.51 |
| KRH47566 | Soybean | plastid | 21.67 | 35.28 |
| KRH06143 | Soybean | cytosol, plastid | 21.38 | 35.03 |
| Solyc06g062860.2.1 | Tomato | cytosol | 20.7 | 34.19 |
| Solyc03g121950.2.1 | Tomato | plastid | 20.99 | 34.12 |
| Os02t0480900-01 | Rice | nucleus | 19.14 | 33.33 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 19.14 | 33.28 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 18.66 | 32.65 |
| OQU84946 | Sorghum | nucleus | 18.95 | 32.23 |
| PGSC0003DMT400012530 | Potato | nucleus | 6.12 | 31.19 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 19.63 | 31.08 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 19.24 | 30.75 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 18.66 | 30.19 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 18.85 | 29.71 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 18.17 | 29.45 |
| Bra026388.1-P | Field mustard | nucleus | 8.26 | 18.16 |
Protein Annotations
| EnsemblPlants:Bra001533.1 | EnsemblPlants:Bra001533.1-P | EnsemblPlantsGene:Bra001533 | Gene3D:2.30.30.100 | InterPro:LsmAD_domain | InterPro:SM_dom_ATX |
| PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF14438 | SEG:seg | SMART:SM01272 |
| UniParc:UPI000254095D | UniProt:M4CBF3 | MapMan:35.1 | : | : | : |
Description
AT3G14010 (E=4e-124) CID4 | CID4 (CTC-Interacting Domain 4); protein binding
Coordinates
chrA03:+:16892811..16900186
Molecular Weight (calculated)
112305.0 Da
IEP (calculated)
5.208
GRAVY (calculated)
-0.691
Length
1029 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSGEDGSLKR HSRDSLVYLT TCMIGHLVEA HLKNGSVYSG IFHAADVEKD FGIVLKMASL VKDGTLPGHK SRSQFVRKPP YKIFIIPADE LVQVVAKDLS
0101: VVSDGKLNAV QSDKSVELLT DSSISKSCRV VQRSERKPRV LDGEAPEGLD NVFDESCKSE EQVLKATPLM VSSQLKVQES TSLVQTVEEK NSPGKESAEA
0201: SPSSMSSSQL TYTPEEEKEE GIESFFKVAT VASREAAIAC LTHCKWNQDD AISYFFGDYT KAIQDSTSPV KESAEALSSS MSSILLTNSP EEQLSRLKEE
0301: IVKSFCDVVI VASRKDAEAC LSHCKWNQED AIRYFFGDYT EANPEIACES QLGERRNNNN PEVAHSNRTP EKSVSGSGHG DIKEGGGGTS ASKTVAEDER
0401: QVSQISGETK SESAFGQSDS RRISESGPAT PTSTRPGLSP SSPISSLPSP EKSTLNPNAK FEQFKATMNV EDGSLKRRSR DSLVYLTTCM IGHLVEAYLK
0501: NGSVYSGIFH AADVEKDFGI VLKMASLVKD GTLRGHKSRS EFVRKPPYKT FIITGDELVQ VVAKDLSVFS DGKLKAVQSE KSVELLTDSS ISKSCRVDQG
0601: RELKPWLPDG QVPEGLDNVF DKPWKRGGWD QFKVNQERFG VRSTFNEEMY TTPLDRGLWT RELEEKAREI AREIEGENTG DLHVAEERGL QVNEKFDTDE
0701: EAKYSAVRRV DGFDDSGFDE EDDKLLDTCN DQTFGGSSTS IVQKPPSSSG QKPTSSSGKG YGGESCSISD DHAGHLPSEQ RSKYFPARGS SISESQLGER
0801: RNNNNPEVAR SNRSPEVSVS GHGDIEEGAN LGGGGTSSAS MTVAEKERQV NQVSGERKSE SSFGQSASRR GSESGPAPSA STRPGLSSPS SSISSLPSSE
0901: KSILNPNAKE FKPSQSPAPV RPQSSIAGGS FYYAAPPPPV QQMPVMPVMP AGYGVQPQYP GQQQLLRYPG HEYPQTYYPP NAPPQYQQWQ QLMMQGQELM
1001: MQGQHPRPPD MIYMPLPPPY QPGNPHNQG
0101: VVSDGKLNAV QSDKSVELLT DSSISKSCRV VQRSERKPRV LDGEAPEGLD NVFDESCKSE EQVLKATPLM VSSQLKVQES TSLVQTVEEK NSPGKESAEA
0201: SPSSMSSSQL TYTPEEEKEE GIESFFKVAT VASREAAIAC LTHCKWNQDD AISYFFGDYT KAIQDSTSPV KESAEALSSS MSSILLTNSP EEQLSRLKEE
0301: IVKSFCDVVI VASRKDAEAC LSHCKWNQED AIRYFFGDYT EANPEIACES QLGERRNNNN PEVAHSNRTP EKSVSGSGHG DIKEGGGGTS ASKTVAEDER
0401: QVSQISGETK SESAFGQSDS RRISESGPAT PTSTRPGLSP SSPISSLPSP EKSTLNPNAK FEQFKATMNV EDGSLKRRSR DSLVYLTTCM IGHLVEAYLK
0501: NGSVYSGIFH AADVEKDFGI VLKMASLVKD GTLRGHKSRS EFVRKPPYKT FIITGDELVQ VVAKDLSVFS DGKLKAVQSE KSVELLTDSS ISKSCRVDQG
0601: RELKPWLPDG QVPEGLDNVF DKPWKRGGWD QFKVNQERFG VRSTFNEEMY TTPLDRGLWT RELEEKAREI AREIEGENTG DLHVAEERGL QVNEKFDTDE
0701: EAKYSAVRRV DGFDDSGFDE EDDKLLDTCN DQTFGGSSTS IVQKPPSSSG QKPTSSSGKG YGGESCSISD DHAGHLPSEQ RSKYFPARGS SISESQLGER
0801: RNNNNPEVAR SNRSPEVSVS GHGDIEEGAN LGGGGTSSAS MTVAEKERQV NQVSGERKSE SSFGQSASRR GSESGPAPSA STRPGLSSPS SSISSLPSSE
0901: KSILNPNAKE FKPSQSPAPV RPQSSIAGGS FYYAAPPPPV QQMPVMPVMP AGYGVQPQYP GQQQLLRYPG HEYPQTYYPP NAPPQYQQWQ QLMMQGQELM
1001: MQGQHPRPPD MIYMPLPPPY QPGNPHNQG
001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.