Factsheet for Os02t0480900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0426866-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	Os08t0426866-00	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU84946	Sorghum	nucleus	71.91	70.25
TraesCS6D01G024600.2	Wheat	nucleus	68.36	68.71
TraesCS6B01G028800.1	Wheat	nucleus	67.85	67.74
TraesCS6A01G022300.1	Wheat	nucleus	62.61	67.03
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	69.71	64.88
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	68.02	62.42
Zm00001d016496_P004	Maize	cytosol, plastid	65.65	59.42
GSMUA_Achr6P06300_001	Banana	mitochondrion	44.33	40.31
GSMUA_Achr7P11380_001	Banana	mitochondrion	43.15	40.09
VIT_09s0002g01560.t01	Wine grape	nucleus	42.64	39.94
KRH23258	Soybean	cytosol	42.81	39.53
KRH10084	Soybean	nucleus	42.64	39.25
KRH06143	Soybean	cytosol, plastid	40.95	38.53
CDY08218	Canola	cytosol	35.19	38.38
KRH47566	Soybean	plastid	40.78	38.13
Bra014367.1-P	Field mustard	cytosol	34.69	38.1
CDY26136	Canola	cytosol	34.18	38.04
AT1G54170.1	Thale cress	nucleus	36.21	36.46
PGSC0003DMT400012530	Potato	nucleus	12.35	36.14
AT3G14010.5	Thale cress	nucleus, plastid	36.55	35.82
Solyc06g062860.2.1	Tomato	cytosol	37.56	35.63
Solyc03g121950.2.1	Tomato	plastid	37.9	35.39
CDY51396	Canola	cytosol	34.69	34.45
Bra037969.1-P	Field mustard	cytosol	33.67	33.5
CDY33083	Canola	nucleus	33.67	33.45
CDY33254	Canola	extracellular	36.21	33.44
Bra021526.1-P	Field mustard	cytosol	36.21	33.39
CDY39090	Canola	cytosol	34.69	31.11
CDX82502	Canola	nucleus	33.33	19.2
Bra001533.1-P	Field mustard	nucleus	33.33	19.14
CDX75744	Canola	golgi, plastid, vacuole	33.67	17.53
Os04t0625900-01	Rice	plastid	12.69	16.59

Protein Annotations

Gene3D:2.30.30.100	MapMan:35.1	EntrezGene:4329365	EMBL:AK073830	ProteinID:BAD21937.1	ProteinID:BAD22453.1
ProteinID:BAF08764.1	ProteinID:BAS78684.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0010494	GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	InterPro:LsmAD_domain	EnsemblPlantsGene:Os02g0480900
EnsemblPlants:Os02t0480900-01	PFAM:PF06741	PFAM:PF14438	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	UniProt:Q6K2L9
SMART:SM01272	InterPro:SM_dom_ATX	UniParc:UPI0000377D5D	RefSeq:XP_015626799.1	SEG:seg	:

Description

LsmAD domain domain containing protein. (Os02t0480900-01);Hypothetical conserved gene. (Os02t0480900-02);Hypothetical conserved gene. (Os02t0480900-03)

Coordinates

chr2:-:16537356..16545691

Molecular Weight (calculated)

64382.6 Da

IEP (calculated)

6.141

GRAVY (calculated)

-0.832

Length

591 amino acids

Sequence
(BLAST)

001: MNHPQQTMPP RASANGFPHR KLDREGSGRH DNKTQLLRSS SGGFSGAENG GKLGHGSPSR DRLIYVLTQL IGQHVDVHVK NGSIISGILH ATNSDKDLGV
101: IMKMAQVIKD GSARGQKSAA DVVKKPETMI IPGRELVQIL AKDVALGGDE LPKGPSQEKR KDLMIDSAIS RSHYPEEREL ERWAPDEGDS ECIELEKYDR
201: KGNRSWDQFE TNAALFGVKS TFNEELYTTK LERGPHMREL EKHASRIARE IEGEDTKDMH LAEERGLYLD DDFDHDEEIK YSAVRRDTDN TKFKSSTNVL
301: SNTNQVDSLT RAGNTNPKAL LSTADEESSS HLFGTDLPVT NNVSQLVSQS QLNKLLPIDE SRLDDKLTKD SSGNRDTSNL QTENIISEGG RSSISEDLEV
401: PSSSSHASEP SSSGQAKKSS ESLPADSSLS RKVPSSGEYV NSSQGPGSST SSTSERIAAS SVACAPGLSP SSSMGSLSSE KSSLNPNAKE FKLNPNAKSF
501: TPSTSVRPPQ PPASDGPYYY ANNMPTAPLG PPMFPPAYGG QPMVYNAQPG PSPQGYMHPA GPQYGQQMMM GQTRPVYYYA PEMQQYRGRN F

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.