CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69443
CDX85500
CDY28659
CDY38105
CDY67252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	CDX69443	AT5G16560.1	21798944
AT1G54170.1	CDX85500	AT5G16560.1	21798944
AT1G54170.1	CDY28659	AT5G16560.1	21798944
AT1G54170.1	CDY38105	AT5G16560.1	21798944
AT1G54170.1	CDY67252	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08218	Canola	cytosol	83.99	82.29
CDY51396	Canola	cytosol	70.62	63.03
CDY33083	Canola	nucleus	69.3	61.85
AT1G54170.1	Thale cress	nucleus	65.54	59.28
CDY33254	Canola	extracellular	56.5	46.88
CDY39090	Canola	cytosol	54.05	43.55
KRH06143	Soybean	cytosol, plastid	44.44	37.58
KRH23258	Soybean	cytosol	45.2	37.5
KRH47566	Soybean	plastid	44.26	37.18
KRH10084	Soybean	nucleus	44.63	36.92
VIT_09s0002g01560.t01	Wine grape	nucleus	43.13	36.29
Solyc06g062860.2.1	Tomato	cytosol	42.18	35.96
Solyc03g121950.2.1	Tomato	plastid	42.18	35.39
TraesCS6A01G022300.1	Wheat	nucleus	36.72	35.33
TraesCS6B01G028800.1	Wheat	nucleus	38.79	34.8
OQU84946	Sorghum	nucleus	39.17	34.38
TraesCS6D01G024600.2	Wheat	nucleus	38.04	34.35
Os02t0480900-01	Rice	nucleus	38.04	34.18
GSMUA_Achr6P06300_001	Banana	mitochondrion	41.62	34.0
PGSC0003DMT400012530	Potato	nucleus	12.62	33.17
Zm00001d016496_P004	Maize	cytosol, plastid	39.74	32.31
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	38.61	31.83
GSMUA_Achr7P11380_001	Banana	mitochondrion	38.04	31.76
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	37.66	31.5
CDX82502	Canola	nucleus	47.27	24.46
CDX92787	Canola	cytosol, nucleus, plastid	11.68	23.13
CDX75744	Canola	golgi, plastid, vacuole	47.83	22.38
CDY46672	Canola	nucleus	13.18	15.87
CDX89288	Canola	nucleus	13.37	15.24
CDY29262	Canola	nucleus	13.37	15.2
CDX92788	Canola	plastid	3.77	12.12

Protein Annotations

EnsemblPlants:CDY26136	EnsemblPlantsGene:GSBRNA2T00034781001	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LSM_dom_sf	InterPro:LsmAD_domain
InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
ProteinID:CDY26136	ProteinID:CDY26136.1	SEG:seg	SMART:SM01272	SUPFAM:SSF50182	UniParc:UPI0004EBE498
UniProt:A0A078GLD3	MapMan:35.1	:	:	:	:

Description

BnaC06g10600DBnaC06g10600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GLD3]

Coordinates

chrLK032185:+:493589..496659

Molecular Weight (calculated)

58564.9 Da

IEP (calculated)

5.101

GRAVY (calculated)

-0.774

Length

531 amino acids

Sequence
(BLAST)

001: MNSQPSSNGY PHTRVDKETG MKNTAASVDT PSRDPFVYLA TCKIGHHVEV HLRNGSVYSG IFHAADVENN FGIILKMASL IREGGLRGMK PRAPLVSKPP
101: SKIFIIPADQ VVQVIAKDLP VYSNNVSAQC EKPSELLTDS SISQSYHVDS ERELKRWVPD EDVPECPDLE NLFDDPWKRG WNQFEVNETL FGVTSTFDEE
201: LYTTKLERGP RTRELEEQAV RIAREIECEN TRDLHVAEER GLQLSGKFDI DEETKYSSVC PVNEFDDSGY EEEEEILLDC RNNLTFGDST TASNGIKSAS
301: TSKDIPAPGS NESHLAEQGN GKSLESSHHK KPSEESVSGL DASDPACVQW RASDKQSSTD GKLAGQLTDR GKPEWPGTSI SRNPQNSAAS STSSRPIPSP
401: SSSIGSYSSE KSTLNPNAKE FKLNPNAKSF KPSPTATRPQ SPAPEGSFYY PPPVPQMTGI HIGYGMGAAF PGQQPMVYHN TMQPGPSQTF YPPNGPQYHP
501: QQMMVGQQRP VLFMPPSPYQ PEMPYKGRDS Y

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.