Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | CDY16248 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY60798 | AT1G24050.1 | 21798944 |
| AT4G26990.1 | CDY68732 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46672 | Canola | nucleus | 86.06 | 32.2 |
| CDY29262 | Canola | nucleus | 79.39 | 28.05 |
| KRH46148 | Soybean | plastid | 34.55 | 26.64 |
| CDX89288 | Canola | nucleus | 71.52 | 25.32 |
| AT4G26990.1 | Thale cress | plasma membrane | 67.27 | 23.42 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 44.85 | 12.87 |
| KRG98802 | Soybean | nucleus | 37.58 | 12.53 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 36.97 | 12.06 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 36.36 | 11.83 |
| Os04t0625900-01 | Rice | plastid | 26.67 | 9.73 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 25.45 | 9.48 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 24.85 | 9.34 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 24.85 | 9.32 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 25.45 | 9.21 |
| Zm00001d002243_P004 | Maize | mitochondrion | 24.24 | 8.81 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 22.42 | 8.73 |
| CDY26136 | Canola | cytosol | 12.12 | 3.77 |
| CDY33254 | Canola | extracellular | 14.55 | 3.75 |
| CDY08218 | Canola | cytosol | 10.91 | 3.32 |
| CDY51396 | Canola | cytosol | 11.52 | 3.19 |
| CDY33083 | Canola | nucleus | 11.52 | 3.19 |
| CDY39090 | Canola | cytosol | 12.73 | 3.19 |
| CDX82502 | Canola | nucleus | 16.36 | 2.63 |
| CDX92787 | Canola | cytosol, nucleus, plastid | 4.24 | 2.61 |
| CDX75744 | Canola | golgi, plastid, vacuole | 16.36 | 2.38 |
| KRH46146 | Soybean | nucleus, plastid | 3.03 | 1.74 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX92788 | EnsemblPlantsGene:GSBRNA2T00154613001 | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 | ProteinID:CDX92788 | ProteinID:CDX92788.1 |
| SEG:seg | UniParc:UPI0004EEAF52 | MapMan:35.2 | : | : | : |
Description
BnaC07g40460D
Coordinates
chrLK031873:+:828160..829241
Molecular Weight (calculated)
18010.9 Da
IEP (calculated)
10.300
GRAVY (calculated)
-0.232
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQTIPPSKF VPYGNLTAGN TVVGFHYPQH MIGPTVNRAQ PQRFTSPYQS VQASPMFVNP NPQVMVARSG QLVYVQPVSQ NLVQATPPLP PMLSRPLPPA
101: QHVQYLKHQG VVAAGQPMQL CVPQPFTTGG LQPYSVPAQY PVMQPPFNQP MHSAVPNGFF GTKFP
101: QHVQYLKHQG VVAAGQPMQL CVPQPFTTGG LQPYSVPAQY PVMQPPFNQP MHSAVPNGFF GTKFP
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.