Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d052276_P005 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | Zm00001d052276_P005 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 80.62 | 80.26 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 66.74 | 71.46 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 52.86 | 54.18 |
| Os04t0625900-01 | Rice | plastid | 52.64 | 52.88 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 49.78 | 51.36 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 46.04 | 47.61 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 12.11 | 40.74 |
| KRH46148 | Soybean | plastid | 15.42 | 32.71 |
| KRG98802 | Soybean | nucleus | 28.41 | 26.06 |
| CDY46672 | Canola | nucleus | 24.67 | 25.4 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 28.19 | 25.3 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 28.19 | 25.25 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 31.28 | 24.7 |
| CDX92788 | Canola | plastid | 8.81 | 24.24 |
| KRH46146 | Soybean | nucleus, plastid | 15.2 | 24.04 |
| AT4G26990.1 | Thale cress | plasma membrane | 24.89 | 23.84 |
| Bra026388.1-P | Field mustard | nucleus | 23.79 | 23.08 |
| CDX89288 | Canola | nucleus | 23.35 | 22.75 |
| CDY29262 | Canola | nucleus | 23.35 | 22.7 |
| AT5G54920.2 | Thale cress | plastid | 23.79 | 20.69 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 17.18 | 11.94 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 14.98 | 10.71 |
Protein Annotations
| EMBL:BT035119 | EnsemblPlants:Zm00001d002243_P004 | EnsemblPlants:Zm00001d002243_T004 | EnsemblPlantsGene:Zm00001d002243 | EntrezGene:100192981 | InterPro:SM_dom_ATX |
| PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 | PFAM:PF14438 | ProteinID:ONM13653.1 | SEG:seg | UniParc:UPI00017B6759 |
| UniProt:B4FDD1 | MapMan:35.2 | : | : | : | : |
Description
Polyadenylate-binding protein-interacting protein 3
Coordinates
chr2:-:8725779..8730885
Molecular Weight (calculated)
47381.4 Da
IEP (calculated)
10.100
GRAVY (calculated)
-0.078
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MARPRKAKPP PPPPRAAAPS IAEALLMATI CMVGLPVEVR VRDGSTYSGV LHTACVDAGY GVVLKKAKKI ANGKGDANLS LGSFVDTLVV HPDDLVQVIA
101: KGLSLPVKGV CKPLDSNVVA SNGSLKRQNS HANDPKMSKP ENISPLMQTE KCTSVGQGKN TSVKKNGQNS GSATSLSSST GLMGPCFSMN GVSGSATMVP
201: KVDAATSSAI AAPLVASDVK PSQPVSNSAT KMIMSSKSTA KEFKLNPCAR VFSPSFASSR QVLAAMAPVD TYYISHSAPE VPMGVPVYES KSVPGVSPLT
301: NKVHCSNLSP ANYAISPQYV QSIVGHNTSR LDPARVGTPY HPMQVGATYT TPSPQPAMTG KFSPVVYVHP VPQDPLHGTP SGFQGWPRPV LLNSYQASMQ
401: KFQGNTPVYL APPIMATGNL PLVVPSPAPL VQPFQAIHPI MVPAASSVVP GKYM
101: KGLSLPVKGV CKPLDSNVVA SNGSLKRQNS HANDPKMSKP ENISPLMQTE KCTSVGQGKN TSVKKNGQNS GSATSLSSST GLMGPCFSMN GVSGSATMVP
201: KVDAATSSAI AAPLVASDVK PSQPVSNSAT KMIMSSKSTA KEFKLNPCAR VFSPSFASSR QVLAAMAPVD TYYISHSAPE VPMGVPVYES KSVPGVSPLT
301: NKVHCSNLSP ANYAISPQYV QSIVGHNTSR LDPARVGTPY HPMQVGATYT TPSPQPAMTG KFSPVVYVHP VPQDPLHGTP SGFQGWPRPV LLNSYQASMQ
401: KFQGNTPVYL APPIMATGNL PLVVPSPAPL VQPFQAIHPI MVPAASSVVP GKYM
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.