Factsheet for HORVU2Hr1G106820.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G076310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	HORVU6Hr1G076310.1	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	81.55	81.36
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	81.32	80.59
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	48.29	50.0
Os04t0625900-01	Rice	plastid	49.89	48.45
Zm00001d002243_P004	Maize	mitochondrion	47.61	46.04
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	47.61	45.83
KRH46148	Soybean	plastid	15.95	32.71
CDX92788	Canola	plastid	9.34	24.85
GSMUA_Achr3P23200_001	Banana	plastid	7.29	23.7
KRG98802	Soybean	nucleus	25.97	23.03
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	24.15	20.91
VIT_19s0090g00300.t01	Wine grape	nucleus	27.11	20.7
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	23.69	20.55
CDY46672	Canola	nucleus	20.27	20.18
CDX89288	Canola	nucleus	20.5	19.31
CDY29262	Canola	nucleus	20.5	19.27
AT4G26990.1	Thale cress	plasma membrane	20.5	18.99
Bra026388.1-P	Field mustard	nucleus	19.82	18.59
AT5G54920.2	Thale cress	plastid	21.41	18.01
KRH46146	Soybean	nucleus, plastid	10.71	16.38
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	12.07	8.23

Protein Annotations

EnsemblPlants:HORVU2Hr1G106820.1	EnsemblPlantsGene:HORVU2Hr1G106820	InterPro:Ataxin-2_C	PANTHER:PTHR12854	PANTHER:PTHR12854:SF12	PFAM:PF07145
SEG:seg	UniParc:UPI000B47D315	UniProt:A0A287JBY3	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr2H:+:710604987..710610388

Molecular Weight (calculated)

41154.5 Da

IEP (calculated)

10.186

GRAVY (calculated)

-0.032

Length

439 amino acids

Sequence
(BLAST)

001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXTASL HGGYGVVLKK ARKIANGKDN ANLVLGAFVD TLVVLPDDLV QVIAKDFSLA
101: TKDVSKTTAC DVVAASGLMQ PQTSHSGDPK ASRQVEKCSR LCQNSDTSTG KIVPMNSNAA NVASPIEHIV PNWNAIPTSA GIGSKDGNVV NSVLATPVVA
201: SNVKTSQPVN NSSIKAVMSS KITVKESKLN PHAKVFAPSL ASSRPVLAAA PPVNPSYISN SVSGVPTGVP VFQTHSHPGS SSLSSKVVHY NNLAPGNFGI
301: SPQYVQSVVG HNIGRLDPAR LGTPYHPLQV GSTYISPSPQ PMVDGKFSPV VYVHPVSQDA MRGTPVMSQV WPRPLLLNSH QASLQKFQGT APFFGAPPVM
401: ATGNLPMVMP SPATLVQPFQ AIHPIMVPSA PSMYPGKYM

Best Arabidopsis Sequence Match ( AT4G26990.1 )
(BLAST)

001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP

Arabidopsis Description

AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.