CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, peroxisome, plastid
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	peroxisome
PProwler:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99265
KRH45736

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	KRG99265	AT1G24050.1	21798944
AT4G26990.1	KRH45736	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98802	Soybean	nucleus	92.52	40.0
CDX92788	Canola	plastid	26.64	34.55
VIT_19s0090g00300.t01	Wine grape	nucleus	54.21	20.17
CDY46672	Canola	nucleus	37.85	18.37
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	42.06	17.75
CDX89288	Canola	nucleus	37.85	17.38
AT5G54920.2	Thale cress	plastid	42.06	17.24
CDY29262	Canola	nucleus	37.38	17.13
Bra026388.1-P	Field mustard	nucleus	36.92	16.88
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	39.72	16.8
AT4G26990.1	Thale cress	plasma membrane	36.92	16.67
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	32.71	16.51
HORVU2Hr1G106820.1	Barley	cytosol	32.71	15.95
Os04t0625900-01	Rice	plastid	33.64	15.93
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	33.64	15.79
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	32.24	15.68
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.24	15.58
Zm00001d002243_P004	Maize	mitochondrion	32.71	15.42
KRH10084	Soybean	nucleus	12.15	4.05
KRH23258	Soybean	cytosol	11.68	3.91
KRH06143	Soybean	cytosol, plastid	10.75	3.66
KRH46146	Soybean	nucleus, plastid	4.67	3.48
KRH47566	Soybean	plastid	10.28	3.48
GSMUA_Achr3P23200_001	Banana	plastid	0.47	0.74

Protein Annotations

EMBL:ACUP02005326	EnsemblPlants:KRH46148	EnsemblPlantsGene:GLYMA_08G3151001	PANTHER:PTHR12854	PANTHER:PTHR12854:SF12	ProteinID:KRH46148
ProteinID:KRH46148.1	ProteinID:KRH46149.1	UniParc:UPI0006ED7224	UniProt:A0A0R0J1L1	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr8:+:43508039..43510418

Molecular Weight (calculated)

22795.3 Da

IEP (calculated)

10.281

GRAVY (calculated)

-0.105

Length

214 amino acids

Sequence
(BLAST)

001: EFKLNPAAKT FSPSFVNPIS ATSAANMVYI PNSSPPVSVT IQPEVGFNTF ASRPSMPLKV AQYSNLTVSN GGSGSQFSQP IVGHVAHRTQ PLRYATHYSP
101: VLSEHAYMQP SSPAVMVGRS PQLVYVQPVS HDLIHGTTTV PPVSARPLLN HVQFPKQQGG TIGPAMPVSV PPPVLTSGHQ PFALQSHIPL LQPGFPVTRP
201: ISVPGPNGFY GTKY

Best Arabidopsis Sequence Match ( AT5G54920.2 )
(BLAST)

001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.