Factsheet for VIT_19s0090g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g00750.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26990.1	VIT_01s0026g00750.t01	AT1G24050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46148	Soybean	plastid	20.17	54.21
CDX92788	Canola	plastid	12.87	44.85
KRG98802	Soybean	nucleus	37.39	43.43
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	36.7	41.7
PGSC0003DMT400057491	Potato	cytosol, plasma membrane, plastid	36.35	41.22
GSMUA_Achr3P23200_001	Banana	plastid	9.04	38.52
CDY46672	Canola	nucleus	28.7	37.41
AT4G26990.1	Thale cress	plasma membrane	28.87	35.02
CDY29262	Canola	nucleus	28.35	34.9
CDX89288	Canola	nucleus	28.0	34.55
Bra026388.1-P	Field mustard	nucleus	28.0	34.4
KRH46146	Soybean	nucleus, plastid	16.87	33.8
AT5G54920.2	Thale cress	plastid	30.61	33.72
Os04t0625900-01	Rice	plastid	26.43	33.63
TraesCS2A01G473100.2	Wheat	endoplasmic reticulum, plasma membrane, vacuole	24.87	32.28
Zm00001d002243_P004	Maize	mitochondrion	24.7	31.28
EES11463	Sorghum	golgi, mitochondrion, plasma membrane, plastid	24.52	30.92
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	22.43	30.42
TraesCS2D01G472800.1	Wheat	endoplasmic reticulum	22.09	28.86
HORVU2Hr1G106820.1	Barley	cytosol	20.7	27.11
VIT_09s0002g01560.t01	Wine grape	nucleus	16.52	15.06

Protein Annotations

EntrezGene:104877589	MapMan:35.2	EMBL:AM424362	ProteinID:CAN82076	ProteinID:CAN82076.1	ProteinID:CBI26628
ProteinID:CBI26628.3	UniProt:D7T8B6	EMBL:FN595751	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0010494	GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	PFAM:PF14438
PANTHER:PTHR12854	PANTHER:PTHR12854:SF12	InterPro:SM_dom_ATX	UniParc:UPI00019854E5	ArrayExpress:VIT_19s0090g00300	EnsemblPlantsGene:VIT_19s0090g00300
EnsemblPlants:VIT_19s0090g00300.t01	unigene:Vvi.12359	RefSeq:XP_010644443.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:6436194..6451813

Molecular Weight (calculated)

60809.6 Da

IEP (calculated)

8.541

GRAVY (calculated)

-0.216

Length

575 amino acids

Sequence
(BLAST)

001: MGARAREFSD DGVSPSLSQA LVFATMCIIG LPVEVHVKDG SVYSGILHTA CLGKDYGIIL KKARMIKKGK LEANVAHGGM VETLVILTGD LVQVVAKGVQ
101: LSDDDIVRNI TGEDTEAVAG TIPSFECLGT EAKMLKPGNA AVHKKQINNT RNSVQNENGF AHGFMATPSE DNLMSKIVEH EVRRKEPSYL GSALEIENGK
201: RDSKILAKSE EAPSFPDNGR QVGDDRIQGK QDHSKQKYEF HRKETAHEIQ GSSSSSDACI THMKPVEAID GKMASELLPN GVSHDGPAPS CVKPNKSCSE
301: RASAAVMDDI STGVSTSSNS VVGVTSVSCP TSLATPTEMV LPRSSISNKS AKESKLNPGA KVFSPSFTHP RSVTPPAVPA VASVAYVPNN STVVPVASSQ
401: PEIGISPFAP RSSLPVKFVP YSNLIAGNGG SGSQYSQPII GHMASRLQPV RYAGQYQPVQ AGPAYVHPNS QAVMVGRLGQ LVYVHPVSYD VVPGAAAISQ
501: LSARPLLTPN QVQFPKHQGS VPSQALQLCV PPPVLANGQQ PFAVPSHIPL VQPPFPANRP IPVPGSNALF NTKFP

Best Arabidopsis Sequence Match ( AT5G54920.2 )
(BLAST)

001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.