Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d052276_P005 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G26990.1 | Zm00001d052276_P005 | AT1G24050.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002243_P004 | Maize | mitochondrion | 71.46 | 66.74 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 53.54 | 51.24 |
| Os04t0625900-01 | Rice | plastid | 54.01 | 50.66 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 50.0 | 48.29 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 49.06 | 47.27 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 10.61 | 33.33 |
| KRH46148 | Soybean | plastid | 16.51 | 32.71 |
| KRG98802 | Soybean | nucleus | 30.19 | 25.86 |
| CDY46672 | Canola | nucleus | 25.24 | 24.26 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 28.3 | 23.67 |
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 27.83 | 23.32 |
| AT4G26990.1 | Thale cress | plasma membrane | 25.24 | 22.57 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 30.42 | 22.43 |
| CDX92788 | Canola | plastid | 8.73 | 22.42 |
| KRH46146 | Soybean | nucleus, plastid | 15.09 | 22.3 |
| Bra026388.1-P | Field mustard | nucleus | 23.58 | 21.37 |
| CDX89288 | Canola | nucleus | 23.35 | 21.24 |
| CDY29262 | Canola | nucleus | 23.11 | 20.98 |
| AT5G54920.2 | Thale cress | plastid | 22.64 | 18.39 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 14.86 | 9.65 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 14.15 | 9.45 |
Protein Annotations
| EnsemblPlants:Zm00001d026347_P008 | EnsemblPlants:Zm00001d026347_T008 | EnsemblPlantsGene:Zm00001d026347 | InterPro:Ataxin-2_C | InterPro:SM_dom_ATX | PANTHER:PTHR12854 |
| PANTHER:PTHR12854:SF12 | PFAM:PF07145 | PFAM:PF14438 | ProteinID:AQK46332.1 | SEG:seg | UniParc:UPI0008454A59 |
| UniProt:A0A1D6JEY1 | MapMan:35.2 | : | : | : | : |
Description
Polyadenylate-binding protein-interacting protein 3
Coordinates
chr10:+:143968864..143973614
Molecular Weight (calculated)
44330.5 Da
IEP (calculated)
9.742
GRAVY (calculated)
-0.037
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGLPVEVRV RDGSAYAGVL HTACVDAGYG VVLKKAKKIA NGKGDVNLSL GSFVDTLVVC PDDLVQVIAK GLSLPLKGVC KPLDSNVVAA SGSLKPQISH
101: ANDPKMSNKT KNMSPLMQAE KCTSVGQEKN TSVKRNGQDN GITTSLSSST RHVGACLSNN WDSRSGSMVP KVDVITSSAS AVPVVASGVK PSQPVNNSVA
201: KIVTSSKTAA KEFKLNPSAK VFSPSFASSR QVLAAAAPVD TYYISHSAPE VPMGVPVYEP KSVSGVSPLS NKVYCSNLSP ANYAISPQYV PSIMGHNASR
301: LDPSRIGTPY HPMQVGATYT TPSPQPVMAG KFSPVVYVQP GPQDAMHGTT VGFQGWPCPL LLNSYQASMQ KFQGNPPVYL APPVMATGNL PLVVPSPASL
401: VQPFEAIHPI MVPAASSMVP GKYM
101: ANDPKMSNKT KNMSPLMQAE KCTSVGQEKN TSVKRNGQDN GITTSLSSST RHVGACLSNN WDSRSGSMVP KVDVITSSAS AVPVVASGVK PSQPVNNSVA
201: KIVTSSKTAA KEFKLNPSAK VFSPSFASSR QVLAAAAPVD TYYISHSAPE VPMGVPVYEP KSVSGVSPLS NKVYCSNLSP ANYAISPQYV PSIMGHNASR
301: LDPSRIGTPY HPMQVGATYT TPSPQPVMAG KFSPVVYVQP GPQDAMHGTT VGFQGWPCPL LLNSYQASMQ KFQGNPPVYL APPVMATGNL PLVVPSPASL
401: VQPFEAIHPI MVPAASSMVP GKYM
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.