Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plasma membrane 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g064550.2.1 | Tomato | cytosol, plasma membrane, plastid | 86.39 | 86.56 |
| KRH46148 | Soybean | plastid | 17.75 | 42.06 |
| CDX92788 | Canola | plastid | 11.83 | 36.36 |
| VIT_19s0090g00300.t01 | Wine grape | nucleus | 41.22 | 36.35 |
| KRG98802 | Soybean | nucleus | 35.31 | 36.16 |
| GSMUA_Achr3P23200_001 | Banana | plastid | 8.68 | 32.59 |
| CDY46672 | Canola | nucleus | 27.61 | 31.75 |
| AT5G54920.2 | Thale cress | plastid | 31.95 | 31.03 |
| AT4G26990.1 | Thale cress | plasma membrane | 28.8 | 30.8 |
| CDY29262 | Canola | nucleus | 27.81 | 30.19 |
| CDX89288 | Canola | nucleus | 27.22 | 29.61 |
| Bra026388.1-P | Field mustard | nucleus | 27.22 | 29.49 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 24.85 | 28.44 |
| Zm00001d026347_P008 | Maize | cytosol, plasma membrane, plastid | 23.67 | 28.3 |
| Zm00001d002243_P004 | Maize | mitochondrion | 25.25 | 28.19 |
| EES11463 | Sorghum | golgi, mitochondrion, plasma membrane, plastid | 25.25 | 28.07 |
| Os04t0625900-01 | Rice | plastid | 24.06 | 26.99 |
| KRH46146 | Soybean | nucleus, plastid | 15.19 | 26.83 |
| TraesCS2D01G472800.1 | Wheat | endoplasmic reticulum | 22.49 | 25.91 |
| HORVU2Hr1G106820.1 | Barley | cytosol | 20.91 | 24.15 |
| PGSC0003DMT400012530 | Potato | nucleus | 5.13 | 12.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057491 | EnsemblPlantsGene:PGSC0003DMG400022322 | EntrezGene:102582956 | InterPro:SM_dom_ATX | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 |
| PFAM:PF14438 | PGSC:PGSC0003DMG400022322 | RefSeq:XP_006346220.1 | SEG:seg | UniParc:UPI000295CC23 | UniProt:M1C166 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022322]
Coordinates
chr7:+:54811511..54819125
Molecular Weight (calculated)
54665.5 Da
IEP (calculated)
8.875
GRAVY (calculated)
-0.260
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MGYKKGGRFM PEEENGVGAT LRDALLFTTM CIIGLPVDVY IKDGGVYSGI FHTACVDDEY AIVLKRAKMI KKGSREANVA RGSLIETLVI LSEDLVQVVA
101: KGVMLSADSI QGHLDGDNAR TVCSNITYPE YTKKEMKATK FKLSTVDGEK ASKERYVRNG LINKQSDRRE GHESLRERTI LEVQGSSSNV DVSVTQAQAN
201: ALENVTFIKN LELSSNGISH GSPPLSSTKL DDRNNDRHSH EQQTLGKTPC LGPTSSGAPI TSVSCVSSSS APADLVPSRG SIHNASTKES KLNPGAKIFS
301: PSTLQHRTVT PPVVPTMAYV PDSCPVVPVV TAEPEVGITP FAPHPSVPVK FVPYNNLAAG NGGLDVQYAQ PTIGYMGSRT QPARYGSQYH HLQAATGYMH
401: PNSQNVMVGR LGPLVYMHPV SHDIVQSAAG FPQVSTRPLL IPHQVHPPKH QGSTAPQALQ LYMTPPVITG LQQPFTIPSI PITQASFPVM RPMQFPVPNG
501: FVPNKFV
101: KGVMLSADSI QGHLDGDNAR TVCSNITYPE YTKKEMKATK FKLSTVDGEK ASKERYVRNG LINKQSDRRE GHESLRERTI LEVQGSSSNV DVSVTQAQAN
201: ALENVTFIKN LELSSNGISH GSPPLSSTKL DDRNNDRHSH EQQTLGKTPC LGPTSSGAPI TSVSCVSSSS APADLVPSRG SIHNASTKES KLNPGAKIFS
301: PSTLQHRTVT PPVVPTMAYV PDSCPVVPVV TAEPEVGITP FAPHPSVPVK FVPYNNLAAG NGGLDVQYAQ PTIGYMGSRT QPARYGSQYH HLQAATGYMH
401: PNSQNVMVGR LGPLVYMHPV SHDIVQSAAG FPQVSTRPLL IPHQVHPPKH QGSTAPQALQ LYMTPPVITG LQQPFTIPSI PITQASFPVM RPMQFPVPNG
501: FVPNKFV
001: MAIAKKLENE ISRSSPSSSS SSLNEALLIS TMCIIGLQVH VHINDGSVFS GIFYTVSLEN EFSIVLKNAK LTKKGRSKSN VESGKIVETL VILSSNIVQI
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL
101: VAEGVSLSSN VAGEIEGENV VSAVAVSSFN SGKNRRGTNR RRNSAKRENC LESKARTLTS GETAGAMKEP GRRDEVGILQ NKYHPSSLNH QRQAGVRILK
201: NSKKITDVHQ EDNVEARSSS CSLDNMSERV KPIEQEKMPE PSSNGFHDAT ERPSSTENSS SQSTTVDENS EVSLVLVVST NSLPPTQATD PDKKAKEFKL
301: NPGAKTFSPS LAKRLTSAHA GMTPVVANMG YVPSNTPMLP VPEAVQPEIG ISPFLSHASS PSKFVPYTNL ATGNAGGGSH FPQHMVGPTI NRGQPHRFTT
401: QYHSVQPTPM LVNPNPQVMV GRSGQLMYMQ PISQDLVQGA PHNSHLPPRP LFTPQQFQYP KHQSLIATGQ PMHLYAPQPF AANGHQPYTV MPTDIPVMQS
501: PFPINRAMPI PVPNGFYGTK FL
Arabidopsis Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G54920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.