Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400043200 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54170.1 | PGSC0003DMT400043200 | AT5G16560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062860.2.1 | Tomato | cytosol | 67.82 | 21.99 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 51.49 | 16.48 |
| KRH06143 | Soybean | cytosol, plastid | 47.52 | 15.29 |
| KRH47566 | Soybean | plastid | 47.52 | 15.19 |
| KRH23258 | Soybean | cytosol | 47.03 | 14.84 |
| KRH10084 | Soybean | nucleus | 46.04 | 14.49 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 44.06 | 13.69 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 39.11 | 13.1 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 40.59 | 12.89 |
| OQU84946 | Sorghum | nucleus | 38.12 | 12.73 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 34.65 | 12.68 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 37.13 | 12.67 |
| CDY26136 | Canola | cytosol | 33.17 | 12.62 |
| Bra021526.1-P | Field mustard | cytosol | 39.6 | 12.48 |
| Os02t0480900-01 | Rice | nucleus | 36.14 | 12.35 |
| CDY33254 | Canola | extracellular | 39.11 | 12.34 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 35.64 | 12.24 |
| CDY08218 | Canola | cytosol | 32.67 | 12.18 |
| AT1G54170.1 | Thale cress | nucleus | 35.15 | 12.1 |
| Bra014367.1-P | Field mustard | cytosol | 31.68 | 11.9 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 36.63 | 11.65 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 37.62 | 11.64 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 36.63 | 11.49 |
| CDY39090 | Canola | cytosol | 36.63 | 11.23 |
| CDY33083 | Canola | nucleus | 32.67 | 11.09 |
| CDY51396 | Canola | cytosol | 30.69 | 10.42 |
| Bra037969.1-P | Field mustard | cytosol | 29.21 | 9.93 |
| Bra001533.1-P | Field mustard | nucleus | 31.19 | 6.12 |
| CDX82502 | Canola | nucleus | 30.69 | 6.04 |
| CDX75744 | Canola | golgi, plastid, vacuole | 30.2 | 5.37 |
| PGSC0003DMT400057491 | Potato | cytosol, plasma membrane, plastid | 12.87 | 5.13 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012530 | EnsemblPlantsGene:PGSC0003DMG400004888 | InterPro:Ataxin-2_C | PFAM:PF07145 | PGSC:PGSC0003DMG400004888 | SEG:seg |
| UniParc:UPI00029652A1 | UniProt:M1A1C9 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400004888]
Coordinates
chr6:+:48581950..48584319
Molecular Weight (calculated)
21624.2 Da
IEP (calculated)
8.818
GRAVY (calculated)
-0.565
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: METSDGGRLS SDISALHVHP ADQDMITSSR EKFEGAVSSK IQGASQSANS RVRPSSSVLS GSDGAGAAST SADNGLSRTS SVNSFSSEKS TLNPHAKEFK
101: LNPNAKSYMP FQSPLRPASP VSDNSFYYPA GVATVPNMHG MPVGVGPSFS AHQPVMFNPQ ATPVPQQFFH PNGPQYGQQM MIGHPRQVVY MPSYPAEMRR
201: DY
101: LNPNAKSYMP FQSPLRPASP VSDNSFYYPA GVATVPNMHG MPVGVGPSFS AHQPVMFNPQ ATPVPQQFFH PNGPQYGQQM MIGHPRQVVY MPSYPAEMRR
201: DY
001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
Arabidopsis Description
CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.