CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39090	Canola	cytosol	86.56	84.07
AT3G14010.5	Thale cress	nucleus, plastid	63.59	67.5
CDY26136	Canola	cytosol	46.88	56.5
CDY08218	Canola	cytosol	47.34	55.9
CDY33083	Canola	nucleus	48.12	51.76
CDY51396	Canola	cytosol	47.66	51.26
KRH23258	Soybean	cytosol	43.44	43.44
KRH10084	Soybean	nucleus	42.97	42.83
VIT_09s0002g01560.t01	Wine grape	nucleus	40.78	41.36
KRH47566	Soybean	plastid	40.0	40.51
TraesCS6A01G022300.1	Wheat	nucleus	34.84	40.4
Solyc06g062860.2.1	Tomato	cytosol	39.22	40.29
CDX82502	Canola	nucleus	64.53	40.25
KRH06143	Soybean	cytosol, plastid	39.38	40.13
Solyc03g121950.2.1	Tomato	plastid	38.75	39.18
PGSC0003DMT400012530	Potato	nucleus	12.34	39.11
TraesCS6B01G028800.1	Wheat	nucleus	35.0	37.84
TraesCS6D01G024600.2	Wheat	nucleus	34.69	37.76
OQU84946	Sorghum	nucleus	34.38	36.36
Os02t0480900-01	Rice	nucleus	33.44	36.21
CDX75744	Canola	golgi, plastid, vacuole	64.06	36.12
GSMUA_Achr6P06300_001	Banana	mitochondrion	35.31	34.77
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	34.69	34.47
Zm00001d016496_P004	Maize	cytosol, plastid	34.06	33.38
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	32.97	33.23
GSMUA_Achr7P11380_001	Banana	mitochondrion	32.5	32.7
CDX92787	Canola	cytosol, nucleus, plastid	10.16	24.25
CDY46672	Canola	nucleus	12.5	18.14
CDY29262	Canola	nucleus	12.97	17.77
CDX89288	Canola	nucleus	12.5	17.17
CDX92788	Canola	plastid	3.75	14.55

Protein Annotations

EnsemblPlants:CDY33254	EnsemblPlantsGene:GSBRNA2T00054018001	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LsmAD_domain	InterPro:SM_dom_ATX
ncoils:Coil	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
ProteinID:CDY33254	ProteinID:CDY33254.1	SEG:seg	SMART:SM01272	UniParc:UPI0004EDFF75	UniProt:A0A078H6V1
MapMan:35.1	:	:	:	:	:

Description

BnaC01g37270DBnaC01g37270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6V1]

Coordinates

chrLK032309:-:380292..384442

Molecular Weight (calculated)

70175.5 Da

IEP (calculated)

5.568

GRAVY (calculated)

-0.783

Length

640 amino acids

Sequence
(BLAST)

001: MSLLALDLYS ILRDPLFFRI LGDLVIQMVD LGFEAAMNMQ PGLPSKASTN GSPYIRGERE GVLNKAKSIK SHPANAASNG EAGSLKGDSR DGLVYLTTCK
101: IGHLVEVHLK NGSVYSGIFH AADVEKDFGI ILKMASLIKD GGLRGHKTRS EFVRKPPSKT FIIPADELVQ VIAKDLSISS DGMSNAVQSE KSGELLTDSS
201: ISKSFHTDQG RELKPWIPDG DVPQGLDNVF DDPWKRGRGW DQFKVNESLF GVKSTFDEEI YTTKLDRGIR TREMEERAQR IAREIEGENT RDLHVAEERG
301: FQLNEKFDID EESKYSAVLP VDAFDDSGFD EEDDELLDTC NDETFGGSST STVQKPASSS GKGYEELRAA SQPSRNNTSV DQSCSISDDH AQHLPSEQRS
401: KDFNAPGSSI SESQLGERRN KNNPEFSHSN RSAEESVSGH GDTKEGAKLG GGGTSAWKTV AEKERQVSEV SGKPKSESFT GQSASRRSSE SRPGPSTSSR
501: PGLSPSSSIG SLSSSEKSTL NPNAKEFKLN PNAKSFKPTA AARPQSPMAD ASFYYPAAPA PVQQMPGMPL GYGIQPQYPG QQQMIYYPGH QHPQAFYPPN
601: AQPQFPQQQQ QMMMGRQPRP QMVYMPPPYQ PDNPYNQGRE

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.