Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46672 | Canola | nucleus | 49.25 | 29.93 |
| CDX89288 | Canola | nucleus | 42.16 | 24.25 |
| CDY29262 | Canola | nucleus | 42.16 | 24.2 |
| CDY26136 | Canola | cytosol | 23.13 | 11.68 |
| CDY08218 | Canola | cytosol | 23.13 | 11.44 |
| CDY51396 | Canola | cytosol | 25.0 | 11.26 |
| CDY33083 | Canola | nucleus | 23.51 | 10.59 |
| CDY33254 | Canola | extracellular | 24.25 | 10.16 |
| CDY39090 | Canola | cytosol | 24.25 | 9.86 |
| CDX82502 | Canola | nucleus | 22.39 | 5.85 |
| CDX75744 | Canola | golgi, plastid, vacuole | 21.64 | 5.11 |
| CDX92788 | Canola | plastid | 2.61 | 4.24 |
Protein Annotations
| EnsemblPlants:CDX92787 | EnsemblPlantsGene:GSBRNA2T00154612001 | InterPro:LSM_dom_sf | InterPro:SM_dom_ATX | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF12 |
| PFAM:PF14438 | ProteinID:CDX92787 | ProteinID:CDX92787.1 | SEG:seg | SUPFAM:SSF50182 | UniParc:UPI0004EDE9D7 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC07g40450D
Coordinates
chrLK031873:+:826400..828071
Molecular Weight (calculated)
28810.1 Da
IEP (calculated)
8.113
GRAVY (calculated)
-0.471
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHARKLEDD NSPSSPLNET LLIATMCIVG LQVHVHVKDG SVFSGVFYTA SFEDGFGIVL KNAKMTKKGK SKANVASGSV VETLVIMSPN IVQVVAEGVS
101: LPSNVTGNNE SVIVGSAMET LPRLCAAKKN GIEGRGNHHR RQPGAKILKR NEHILDVHQE DIQSSSSNLD SMSGRVRPIE EDKLMPKPIS NGFHDAAERP
201: SSTDNSSSRS ETVDETSELC QGLKASPNES APTQDVKKAK EFKLNPEAKN FSPSYTKRLS PSPAAIYA
101: LPSNVTGNNE SVIVGSAMET LPRLCAAKKN GIEGRGNHHR RQPGAKILKR NEHILDVHQE DIQSSSSNLD SMSGRVRPIE EDKLMPKPIS NGFHDAAERP
201: SSTDNSSSRS ETVDETSELC QGLKASPNES APTQDVKKAK EFKLNPEAKN FSPSYTKRLS PSPAAIYA
001: MGNARKVEDD DNNNNNKSSS SVLIAATMCI IGLQVHVHVK DGSVFSGIFF TASVDNGFGI VLKDARITKK GTSISNVASG SVVDTLVILS STIVQIIAEG
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
101: VSLPSNVTTA NNEVGSATET LPSEPRLCAA NKSTNVSTQG RGFNHKRQAG AQILKRSVQI PEVYQQDNID IQSSSSSLDS MSERVKPIEE DNLMPEPLSN
201: GFHNAAAKPS STDNLLSEST PVDDTLELCR GRVAASSTAS VPIQAVKKPK EFKLNPEAKI FSPSYTKRLS PSPVGMPHVG NIAYIPSNTP MLPVPEAIYP
301: EVVNNPYVPQ APPPSKFVPY GNVTAGHAVG GFQFPQHMIG PTVNRAQPQR YTAQYHSVQA APMLVNPSPQ VMVARSGQLV YVQSVSQDLV QGTPPLSPML
401: SCPLPTAQHV QYLKHQGVVA AGQPLPLCVS LPFTTGGPQP YGIPTQFPAM QQPPFPTNQP MTVAVPNGFY TKFP
Arabidopsis Description
AT4g26990/F10M23_330 [Source:UniProtKB/TrEMBL;Acc:Q8RY61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.