CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69443
CDX85500
CDY28659
CDY38105
CDY67252

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	CDX69443	AT5G16560.1	21798944
AT1G54170.1	CDX85500	AT5G16560.1	21798944
AT1G54170.1	CDY28659	AT5G16560.1	21798944
AT1G54170.1	CDY38105	AT5G16560.1	21798944
AT1G54170.1	CDY67252	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014367.1-P	Field mustard	cytosol	91.7	92.38
CDY26136	Canola	cytosol	82.29	83.99
CDY51396	Canola	cytosol	71.59	65.21
CDY33083	Canola	nucleus	70.11	63.87
AT1G54170.1	Thale cress	nucleus	64.02	59.11
CDY33254	Canola	extracellular	55.9	47.34
CDY39090	Canola	cytosol	53.69	44.16
KRH06143	Soybean	cytosol, plastid	45.57	39.33
KRH23258	Soybean	cytosol	46.13	39.06
KRH47566	Soybean	plastid	45.02	38.61
KRH10084	Soybean	nucleus	45.57	38.47
VIT_09s0002g01560.t01	Wine grape	nucleus	44.65	38.35
Solyc06g062860.2.1	Tomato	cytosol	42.44	36.92
TraesCS6A01G022300.1	Wheat	nucleus	37.27	36.59
Solyc03g121950.2.1	Tomato	plastid	42.44	36.33
TraesCS6B01G028800.1	Wheat	nucleus	38.56	35.3
TraesCS6D01G024600.2	Wheat	nucleus	38.19	35.2
Os02t0480900-01	Rice	nucleus	38.38	35.19
GSMUA_Achr6P06300_001	Banana	mitochondrion	42.07	35.08
OQU84946	Sorghum	nucleus	38.56	34.55
PGSC0003DMT400012530	Potato	nucleus	12.18	32.67
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	38.75	32.61
Zm00001d016496_P004	Maize	cytosol, plastid	38.93	32.31
GSMUA_Achr7P11380_001	Banana	mitochondrion	37.82	32.23
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	37.27	31.81
CDX82502	Canola	nucleus	47.23	24.95
CDX92787	Canola	cytosol, nucleus, plastid	11.44	23.13
CDX75744	Canola	golgi, plastid, vacuole	47.23	22.56
CDY46672	Canola	nucleus	13.28	16.33
CDY29262	Canola	nucleus	13.84	16.06
CDX89288	Canola	nucleus	13.65	15.88
CDX92788	Canola	plastid	3.32	10.91

Protein Annotations

EnsemblPlants:CDY08218	EnsemblPlantsGene:GSBRNA2T00125535001	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LSM_dom_sf	InterPro:LsmAD_domain
InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
ProteinID:CDY08218	ProteinID:CDY08218.1	SEG:seg	SMART:SM01272	SUPFAM:SSF50182	UniParc:UPI0004EDD06B
UniProt:A0A078F8Y2	MapMan:35.1	:	:	:	:

Description

BnaA05g14010DBnaA05g14010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8Y2]

Coordinates

chrLK031984:-:170074..173309

Molecular Weight (calculated)

59338.8 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.737

Length

542 amino acids

Sequence
(BLAST)

001: MNSQPSSSGY PHTRVDKETG MKVTENGGKA GSVDTPSRDP FVYLTTCKIG HHVEVQLKNG SVYSGIFHAA DVENNFGIIL KMASLIREGS VRGMKPRAPL
101: VSKPPSKVFI IPADEVVQVI AKDLPVYSNN VSECEKPSEL LTDSSISQSY HVDSERELKR WVPDEDVPDC PDLENVFDDP WKRGWNQFEV NETLFGVTST
201: FDEELYTTKL ERGPRTRELE EQALRIAGEI EGENTRDLHV AEERGLQLSG KFDIDEETKY SSVCPANGFD DSGYEEEEEI LLDCRNNLTF GDSTTGSNGI
301: KSASAGKDIP IPSPGSNIRN ESQLAEQRNG KILESKPSEE SVSGLDDTKA DAAASDPASV QWRASDKQSS TDGKLAGPLT DRGKSEWPGT SISRNPENSA
401: ASSTSSLPML SPSSSIGSYS SEKSTLNPNA KEFKLNPNAK SFKPSPTATR PQSPVPEGSF YYPPLPQMTG IHIGYGMGAA FPGQQPMVYH NTMQPGPNQT
501: FYPPNGPQYH PQQIIAGQQR PVLFMPPSPY QPEMPYKGRD SY

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.