Factsheet for Solyc06g062860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g066340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	Solyc06g066340.2.1	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121950.2.1	Tomato	plastid	71.11	69.98
PGSC0003DMT400012530	Potato	nucleus	21.99	67.82
VIT_09s0002g01560.t01	Wine grape	nucleus	55.7	54.99
KRH23258	Soybean	cytosol	53.45	52.03
KRH10084	Soybean	nucleus	52.65	51.09
KRH06143	Soybean	cytosol, plastid	48.64	48.25
KRH47566	Soybean	plastid	48.31	47.63
Bra014367.1-P	Field mustard	cytosol	37.08	42.94
CDY08218	Canola	cytosol	36.92	42.44
CDY26136	Canola	cytosol	35.96	42.18
AT3G14010.5	Thale cress	nucleus, plastid	39.97	41.29
TraesCS6A01G022300.1	Wheat	nucleus	36.12	40.76
AT1G54170.1	Thale cress	nucleus	37.08	39.35
TraesCS6D01G024600.2	Wheat	nucleus	37.08	39.29
CDY33254	Canola	extracellular	40.29	39.22
TraesCS6B01G028800.1	Wheat	nucleus	37.24	39.19
Bra021526.1-P	Field mustard	cytosol	40.29	39.16
Bra037969.1-P	Field mustard	cytosol	37.24	39.06
OQU84946	Sorghum	nucleus	37.88	39.01
CDY33083	Canola	nucleus	37.08	38.82
CDY51396	Canola	cytosol	36.76	38.49
GSMUA_Achr7P11380_001	Banana	mitochondrion	38.36	37.58
Os02t0480900-01	Rice	nucleus	35.63	37.56
GSMUA_Achr6P06300_001	Banana	mitochondrion	39.0	37.38
CDY39090	Canola	cytosol	39.0	36.87
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.28	35.59
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	36.6	35.4
Zm00001d016496_P004	Maize	cytosol, plastid	36.92	35.22
CDX82502	Canola	nucleus	34.35	20.86
Bra001533.1-P	Field mustard	nucleus	34.19	20.7
CDX75744	Canola	golgi, plastid, vacuole	33.55	18.41
Solyc07g064550.2.1	Tomato	cytosol, plasma membrane, plastid	13.16	16.21

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0010494
GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	UniProt:K4C717	InterPro:LsmAD_domain	PFAM:PF06741
PFAM:PF14438	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	SMART:SM01272	InterPro:SM_dom_ATX	EnsemblPlantsGene:Solyc06g062860.2
EnsemblPlants:Solyc06g062860.2.1	UniParc:UPI000276695E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:39656022..39669462

Molecular Weight (calculated)

69038.4 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.689

Length

623 amino acids

Sequence
(BLAST)

001: MQQPVQPRSS ANGYGRRKVD REMGTKLENK AQSGKTTSRQ FTGKGGAYQS LSHDRLVYFT TCLVGHQVEV QVMDGSVFSG ILHATNAEKD FGIILKMAQL
101: IKDSSEGMKS SSETFSKPPL KTLIIPGKEF AQVTAKGVPT TLDGFRTEFM LEQQQELLTD SCISQSRHIE VERQLERWVP DDDAPECPDL DNIFDDHWNR
201: GWDQFQANET LFGVKSTFDE DLYTTKLERG PQMSELEKEA LRIAREIEGE DTRDLHLAEE RGIQLHENLE VDEETRFSAV VREIDDSGYD NCEDILLDSR
301: NDETFQGISS AMGKSFTDMG RRKMNDGAQV SLRSSFMDEV QSSKLSTSRD VYQTCYDDHA KQSSAEVVLK GGSILNRGRK TLFSEHAGAS WNKEDTRNQM
401: TDEVAQTSVL EDSMSSSRMK METSDGGRLS PDISALHVHP ADQDMITSSS REKFEGAVSS KIQGAPQSAN SRVRPSSSVL SGSDGTGAAS TSADNGLSRT
501: SSVNSFSSEK STLNPHAKEF KLNPNAKSFM PFQSPLRPAS PVSDSSFYYP AGVATVPNVH GMPVGVGPSF SPHQPVMFNP QATPVPQQFF HPNGPQYGQQ
601: MMIGPPRQVV YMPNYPAEMR RDY

Best Arabidopsis Sequence Match ( AT3G14010.1 )
(BLAST)

001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.