CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001533.1-P	Field mustard	nucleus	97.47	97.18
CDY33254	Canola	extracellular	40.25	64.53
CDY39090	Canola	cytosol	38.3	59.64
CDX75744	Canola	golgi, plastid, vacuole	64.91	58.68
AT3G14010.5	Thale cress	nucleus, plastid	33.43	56.88
CDY26136	Canola	cytosol	24.46	47.27
CDY08218	Canola	cytosol	24.95	47.23
CDY33083	Canola	nucleus	25.63	44.2
CDY51396	Canola	cytosol	25.44	43.87
KRH23258	Soybean	cytosol	23.88	38.28
KRH10084	Soybean	nucleus	23.29	37.23
VIT_09s0002g01560.t01	Wine grape	nucleus	22.03	35.82
TraesCS6A01G022300.1	Wheat	nucleus	19.2	35.69
KRH47566	Soybean	plastid	21.54	34.97
KRH06143	Soybean	cytosol, plastid	21.25	34.71
Solyc06g062860.2.1	Tomato	cytosol	20.86	34.35
Solyc03g121950.2.1	Tomato	plastid	20.96	33.97
Os02t0480900-01	Rice	nucleus	19.2	33.33
TraesCS6B01G028800.1	Wheat	nucleus	19.2	33.28
TraesCS6D01G024600.2	Wheat	nucleus	18.81	32.82
OQU84946	Sorghum	nucleus	18.91	32.07
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	19.4	30.9
GSMUA_Achr6P06300_001	Banana	mitochondrion	19.49	30.77
PGSC0003DMT400012530	Potato	nucleus	6.04	30.69
GSMUA_Achr7P11380_001	Banana	mitochondrion	18.71	30.19
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.23	29.45
Zm00001d016496_P004	Maize	cytosol, plastid	18.71	29.4
CDX92787	Canola	cytosol, nucleus, plastid	5.85	22.39
CDY46672	Canola	nucleus	7.99	18.59
CDY29262	Canola	nucleus	8.28	18.2
CDX89288	Canola	nucleus	8.19	18.03
CDX92788	Canola	plastid	2.63	16.36

Protein Annotations

EnsemblPlants:CDX82502	EnsemblPlantsGene:GSBRNA2T00137645001	Gene3D:2.30.30.100	InterPro:LsmAD_domain	InterPro:SM_dom_ATX	PANTHER:PTHR12854
PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF14438	ProteinID:CDX82502	ProteinID:CDX82502.1	SEG:seg
SMART:SM01272	UniParc:UPI0004EED7F9	MapMan:35.1	:	:	:

Description

BnaA03g33190D

Coordinates

chrLK031828:-:1597079..1608207

Molecular Weight (calculated)

111831.0 Da

IEP (calculated)

5.310

GRAVY (calculated)

-0.709

Length

1026 amino acids

Sequence
(BLAST)

0001: MSGEDGSLKR HSRDSLVYLT TCMIGHLVEA HLKNGSVYSG IFHAADVEKD FGIVLKMASL VKDGTLPGHK SRSQFVRKPP YKTFIIPADE LVQVVAKDLS
0101: VVSDGKLNAV QSDKSGELLT DSSISKSCRV VQRSERKSRV LDGEAPEGLD NVFDESCKSE EQVLKATPLM VSSQLKVQES TSLVQTVEEK NSPGKESAEA
0201: SPSSMSSSQL TYTPEEGKEE GIESFLKVAT VASREAAIAC LTKCKWNQDD AISYFFGDYT KAIQDSPSPV KESAEALSSS MSSILLTNSP EEQLSRLKEE
0301: IVKSFCDVVI VASRKDAEAC LSHCKWNQED AIRYFFGDYT EANPEIACES QLGERRNNNN PEGARSNRTP EKSVSGSGHG DIKEGGGGTS ASKTVAENER
0401: QVSQISGETK SESAFGQSDS RRISESGPAT PTSTRPGLSP SSPISSLPSP EKSTLNPNAK FEQFKATMNV EDGSLKRRSR DSLVYLTTCM IGHLVEAYLK
0501: NGSVYSGIFH AADVEKDFGI VLKMASLVKD GTLRGHKSRS EFVRKPPYKT FIITGDELVQ VVAKDLSVFS DGKLKAVQSE KSVELLTDSS ISKSCRVDQG
0601: RELKHWVPDG QAPEGLDNVF DKPWKRGGWD QFKVNQERFG VMSTFNEEMY TTPLDRGLWT RELEEKAREI AREIEGENTG DLHVAEERGL QVNEKFDTDE
0701: EAKYSAVRRV DGFDDSGFDE EDDKLLDTCN DQTFGGSSTS IVQKPASSSG QKPTSSSGKG YGGESCSISD DHAGHLPSEQ RSKYFPARGS SISESQLGER
0801: RNNNNPEVAR SNRTPEKSVS GHGDIEECAN LGGGGTSSAS MTVAEKERQV DQVSGERKSE SSFGQSASRR GSESGPAPSA STRPGLSSPS SSISSLPSSE
0901: KSILNPNAKE FKPSQSPAPV RPQSPIAGGS FYYAAPPPPV QQMPVMPAGY GIQPQYPGQQ QLLRYPGHEY PQTYYPPNAP PQYQQWQQLM MQGQELMMQG
1001: QHPRPPDMIY MPLPPPYQPG NPHNQG

Best Arabidopsis Sequence Match ( AT3G14010.5 )
(BLAST)

001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.