Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G024600.2 | Wheat | nucleus | 93.3 | 87.58 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 87.86 | 81.93 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 88.77 | 76.09 |
| OQU84946 | Sorghum | nucleus | 68.84 | 62.81 |
| Os02t0480900-01 | Rice | nucleus | 67.03 | 62.61 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 66.49 | 57.8 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 64.13 | 54.21 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 46.2 | 39.23 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 44.02 | 38.21 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 43.12 | 37.72 |
| KRH23258 | Soybean | cytosol | 43.48 | 37.5 |
| CDY08218 | Canola | cytosol | 36.59 | 37.27 |
| KRH10084 | Soybean | nucleus | 43.3 | 37.23 |
| Bra014367.1-P | Field mustard | cytosol | 36.05 | 36.99 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 40.22 | 36.82 |
| CDY26136 | Canola | cytosol | 35.33 | 36.72 |
| KRH06143 | Soybean | cytosol, plastid | 41.67 | 36.62 |
| Solyc06g062860.2.1 | Tomato | cytosol | 40.76 | 36.12 |
| Solyc03g121950.2.1 | Tomato | plastid | 40.94 | 35.7 |
| KRH47566 | Soybean | plastid | 40.76 | 35.6 |
| AT1G54170.1 | Thale cress | nucleus | 37.5 | 35.26 |
| CDY33254 | Canola | extracellular | 40.4 | 34.84 |
| Bra021526.1-P | Field mustard | cytosol | 40.4 | 34.79 |
| PGSC0003DMT400012530 | Potato | nucleus | 12.68 | 34.65 |
| CDY51396 | Canola | cytosol | 35.51 | 32.94 |
| CDY39090 | Canola | cytosol | 38.95 | 32.63 |
| CDY33083 | Canola | nucleus | 35.14 | 32.6 |
| Bra037969.1-P | Field mustard | cytosol | 34.96 | 32.49 |
| CDX82502 | Canola | nucleus | 35.69 | 19.2 |
| Bra001533.1-P | Field mustard | nucleus | 35.51 | 19.05 |
| CDX75744 | Canola | golgi, plastid, vacuole | 35.69 | 17.36 |
| TraesCS2A01G473100.2 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 10.87 | 13.54 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G022300.1 | EnsemblPlantsGene:TraesCS6A01G022300 | Gene3D:2.30.30.100 | InterPro:LsmAD_domain | InterPro:SM_dom_ATX | ncoils:Coil |
| PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF14438 | SEG:seg | SMART:SM01272 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:11162372..11170053
Molecular Weight (calculated)
60470.2 Da
IEP (calculated)
6.477
GRAVY (calculated)
-0.841
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSRQQQHVP LRTSANGAPH RKLDREGSGR HDSKSHLMRS SSGGFTSAEN GGKLGHANPS RDRLVYVMTQ IIGHHVDVHV KNGSVISGIF HATNTDKDFG
101: IILKMAQPIK DTSVGGQINT SDVVRKPETM IIPAQELVQV FAKDVTLGGD ELPKGPVHDK RKDLMIDSAI SRSHFPEERE LERWAPDEGD SDCIELEKFD
201: RKGHRSWDQF ETNAALFGVK STFNEDLYTT KLERGPHMRE LEKHASRIAR EIEGEDTEDL HLAEERGLYL DEDLEHDEEI KYSAVRRDTD TTVKPFTNVP
301: SRPVSIDTKD LPVCSSTMDD KSSSHISGGT HLSATAEYQS NKLLPADANR LDGKRNKDSS GDKDNRILQP ENTLTEGGRP LISEDLEGAP SRSRASEPSS
401: SGQGNKSSDA ASAANSAASA APGLSPSSSM GSLSSDKSSL NPNAKEFKLN PNAKSFTPLT SPRPHHPPAP DATYYYPNNM GATGPGLPVG MGFPQAYGGQ
501: PVVYNAQPGS SPQGYMHPSG QQYGQQMMMG QTRPVYYYAP EMQQQQYRGR NF
101: IILKMAQPIK DTSVGGQINT SDVVRKPETM IIPAQELVQV FAKDVTLGGD ELPKGPVHDK RKDLMIDSAI SRSHFPEERE LERWAPDEGD SDCIELEKFD
201: RKGHRSWDQF ETNAALFGVK STFNEDLYTT KLERGPHMRE LEKHASRIAR EIEGEDTEDL HLAEERGLYL DEDLEHDEEI KYSAVRRDTD TTVKPFTNVP
301: SRPVSIDTKD LPVCSSTMDD KSSSHISGGT HLSATAEYQS NKLLPADANR LDGKRNKDSS GDKDNRILQP ENTLTEGGRP LISEDLEGAP SRSRASEPSS
401: SGQGNKSSDA ASAANSAASA APGLSPSSSM GSLSSDKSSL NPNAKEFKLN PNAKSFTPLT SPRPHHPPAP DATYYYPNNM GATGPGLPVG MGFPQAYGGQ
501: PVVYNAQPGS SPQGYMHPSG QQYGQQMMMG QTRPVYYYAP EMQQQQYRGR NF
001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG
401: ASSVSKAVTE REREASQVSS KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA KSFKPLQSAA APPQSPIADA
501: SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.