Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G024600.2 | Wheat | nucleus | 92.74 | 93.37 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 81.93 | 87.86 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 94.76 | 87.11 |
| OQU84946 | Sorghum | nucleus | 70.61 | 69.09 |
| Os02t0480900-01 | Rice | nucleus | 67.74 | 67.85 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 67.23 | 62.68 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 65.88 | 59.72 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 43.41 | 39.54 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 41.72 | 39.14 |
| KRH10084 | Soybean | nucleus | 42.4 | 39.1 |
| KRH23258 | Soybean | cytosol | 42.23 | 39.06 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 41.72 | 38.84 |
| CDY26136 | Canola | cytosol | 34.8 | 38.79 |
| CDY08218 | Canola | cytosol | 35.3 | 38.56 |
| Bra014367.1-P | Field mustard | cytosol | 34.63 | 38.1 |
| KRH06143 | Soybean | cytosol, plastid | 39.53 | 37.26 |
| Solyc06g062860.2.1 | Tomato | cytosol | 39.19 | 37.24 |
| PGSC0003DMT400012530 | Potato | nucleus | 12.67 | 37.13 |
| Solyc03g121950.2.1 | Tomato | plastid | 39.53 | 36.97 |
| AT3G14010.5 | Thale cress | nucleus, plastid | 37.16 | 36.48 |
| AT1G54170.1 | Thale cress | nucleus | 36.15 | 36.46 |
| KRH47566 | Soybean | plastid | 38.68 | 36.23 |
| Bra021526.1-P | Field mustard | cytosol | 38.01 | 35.1 |
| CDY33254 | Canola | extracellular | 37.84 | 35.0 |
| CDY33083 | Canola | nucleus | 34.8 | 34.62 |
| CDY51396 | Canola | cytosol | 34.63 | 34.45 |
| Bra037969.1-P | Field mustard | cytosol | 34.29 | 34.18 |
| CDY39090 | Canola | cytosol | 36.49 | 32.78 |
| CDX82502 | Canola | nucleus | 33.28 | 19.2 |
| Bra001533.1-P | Field mustard | nucleus | 33.28 | 19.14 |
| CDX75744 | Canola | golgi, plastid, vacuole | 33.28 | 17.36 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G028800.1 | EnsemblPlantsGene:TraesCS6B01G028800 | Gene3D:2.30.30.100 | InterPro:LsmAD_domain | InterPro:SM_dom_ATX | ncoils:Coil |
| PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF14438 | SEG:seg | SMART:SM01272 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:+:17395374..17405568
Molecular Weight (calculated)
64476.9 Da
IEP (calculated)
6.436
GRAVY (calculated)
-0.830
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSRQQQHEP LRTSANGAPH RKLDREGSGR HDSKSHLMRS SSGGFTSAEN GGKLGHANPS RDRLVYVMTQ IIGHHVDVHV KNGSVISGIF HATNTDKDFG
101: IILKMAQPIK DTSVGGQTNP TDVVRKPETM IIPARELVQV FAKDVTLGGD ELPKGPVHDK RKDLMIDSAI SRSHFPEERE LERWAPDGGD SDCIELEKFD
201: RKGHRSWDQF ETNAALFGVK STFNEDLYTT KLERGPHMRE LEKHASRIAR EIEGEDTEDL HLAEERGLYL DEDLEHDEEI KYSAVWRDTD TTVKPFTNVS
301: SRPGSMDTKD LPVCSSTVDD KSSSHIFGGT HLSATAATGE LASEYQSNKL LPADANRLDG KRSKDSSGGK DNRILQPENT LPEGVRPLIS EDLEGTPSRS
401: RASEPSSSGQ GNKSSDGLAP DSTLPSKLPS APEYANSSQR PGSSTPLTPE RVAANSAASA APGLSPSSSM GSLSSDKSSL NPNAKEFKLN PNAKSFTPLT
501: SPRPPHPPAP DATYYYPNNM GATPGPGLPV GMGFPQAYGG QPVVYNAPPG SSPQGYMHPS GQQYGQQMMM GQTRPVYYYP PEMQQQYRGR NF
101: IILKMAQPIK DTSVGGQTNP TDVVRKPETM IIPARELVQV FAKDVTLGGD ELPKGPVHDK RKDLMIDSAI SRSHFPEERE LERWAPDGGD SDCIELEKFD
201: RKGHRSWDQF ETNAALFGVK STFNEDLYTT KLERGPHMRE LEKHASRIAR EIEGEDTEDL HLAEERGLYL DEDLEHDEEI KYSAVWRDTD TTVKPFTNVS
301: SRPGSMDTKD LPVCSSTVDD KSSSHIFGGT HLSATAATGE LASEYQSNKL LPADANRLDG KRSKDSSGGK DNRILQPENT LPEGVRPLIS EDLEGTPSRS
401: RASEPSSSGQ GNKSSDGLAP DSTLPSKLPS APEYANSSQR PGSSTPLTPE RVAANSAASA APGLSPSSSM GSLSSDKSSL NPNAKEFKLN PNAKSFTPLT
501: SPRPPHPPAP DATYYYPNNM GATPGPGLPV GMGFPQAYGG QPVVYNAPPG SSPQGYMHPS GQQYGQQMMM GQTRPVYYYP PEMQQQYRGR NF
001: MLEQSKAAMS IPQSKSSSNG FPLKRGETEE VLHKTNTSNT VFNGEAGSLK RLSLDRLVYF TTCKIGHHVE VHLRNGSVYT GIFHAANVEK DFGIILKMAC
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
101: LIKDGTLRGH KSRSEFVRKP PSKTFIIPAD ELVQVIAKDL SVSSNNMSNA VQGEKPSELL TDSSISQSYH VDRERQLQRW VPDETIPHGA DLENVFDNPW
201: NRKWNQFEVN KSLFGVKSTF DEDLYTTRLE RGPQTKQLEE HAQKIAREIE AETTRDIHVA EERGLQLNEN FDFDEEARYS SVRPVTGFGD SGFDLEDNAL
301: LDTCNDLTFG GSSTSDGQKP ASSGKGCEEL RVSGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK
401: EGAKSGGGAS SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP
501: PQSPIADASF YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQYP QQQMIPGQQQ QQMIPGQQHP RPVYYMHPPP YPQDMPYHNK
601: GRE
Arabidopsis Description
CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.