CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39002
KRH48713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	KRH39002	AT5G16560.1	21798944
AT1G54170.1	KRH48713	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10084	Soybean	nucleus	93.59	93.3
KRH47566	Soybean	plastid	70.78	71.68
KRH06143	Soybean	cytosol, plastid	70.16	71.5
VIT_09s0002g01560.t01	Wine grape	nucleus	61.41	62.28
Solyc06g062860.2.1	Tomato	cytosol	52.03	53.45
Solyc03g121950.2.1	Tomato	plastid	51.72	52.29
PGSC0003DMT400012530	Potato	nucleus	14.84	47.03
CDY08218	Canola	cytosol	39.06	46.13
Bra014367.1-P	Field mustard	cytosol	38.28	45.54
CDY26136	Canola	cytosol	37.5	45.2
AT1G54170.1	Thale cress	nucleus	41.09	44.8
TraesCS6A01G022300.1	Wheat	nucleus	37.5	43.48
AT3G14010.5	Thale cress	nucleus, plastid	40.94	43.45
CDY33254	Canola	extracellular	43.44	43.44
Bra021526.1-P	Field mustard	cytosol	43.44	43.37
OQU84946	Sorghum	nucleus	40.94	43.31
Os02t0480900-01	Rice	nucleus	39.53	42.81
TraesCS6B01G028800.1	Wheat	nucleus	39.06	42.23
TraesCS6D01G024600.2	Wheat	nucleus	38.59	42.01
CDY51396	Canola	cytosol	38.28	41.18
CDY33083	Canola	nucleus	38.28	41.18
GSMUA_Achr6P06300_001	Banana	mitochondrion	41.72	41.08
GSMUA_Achr7P11380_001	Banana	mitochondrion	40.78	41.04
CDY39090	Canola	cytosol	41.56	40.36
Bra037969.1-P	Field mustard	cytosol	37.34	40.24
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.75	39.06
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	38.91	38.66
Zm00001d016496_P004	Maize	cytosol, plastid	38.75	37.98
CDX82502	Canola	nucleus	38.28	23.88
Bra001533.1-P	Field mustard	nucleus	38.28	23.81
KRH46146	Soybean	nucleus, plastid	10.47	23.34
CDX75744	Canola	golgi, plastid, vacuole	38.28	21.59
KRG98802	Soybean	nucleus	13.59	17.58
KRH46148	Soybean	plastid	3.91	11.68

Protein Annotations

EntrezGene:100812754	Gene3D:2.30.30.100	MapMan:35.1	EMBL:ACUP02008458	InterPro:Ataxin-2_C	ncoils:Coil
EnsemblPlantsGene:GLYMA_13G346900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0010494
GO:GO:0010603	GO:GO:0016043	GO:GO:0034063	UniProt:I1M589	EnsemblPlants:KRH23258	ProteinID:KRH23258
ProteinID:KRH23258.1	ProteinID:KRH23259.1	InterPro:LsmAD_domain	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
SMART:SM01272	InterPro:SM_dom_ATX	UniParc:UPI000233B096	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:+:43713445..43722780

Molecular Weight (calculated)

69446.3 Da

IEP (calculated)

5.570

GRAVY (calculated)

-0.711

Length

640 amino acids

Sequence
(BLAST)

001: MNLQQAGQPK SSNGYGHRKS EREGATKSEN KILSGKLNAN RLANAGAVTG SKGGSYESPS HDRLVYVTTC LIGHQVEVQV KNGSIYSGIF HATNTDKDFG
101: IILKMARLTK DGSLRGQKSG TEFVSKPPLK ILIIPAKDLV QVTAQDVAIT RDGLANESHH DMHQEIMVDS LISQSRHVDL GRELKPWVPD EEDPQCPELE
201: NIFDGHWNRG WDQFETNEAL FGVKSTFNEE LYTTKLEKGP QTRELEKQAL RIAREIEGEE TQDLHLAEER GLHLHEAFDI DEETRFSSVY RGKHVDDSGF
301: DEDILFDSHN SETFGDETFG GVFGSVVKRP GEISGGKGND GARTLANSSS MDHTQSCQSN TCVDLSRSGS YDHAKQLASE LPAKSYSTSD GESRIQENLN
401: SNQHGDNAIT KEENPIQAEE DVQLSRSEDS QGPLYSKKDG SDKGVLSPNA SSYAPSSHTS SKTHEKMGSH GDLIEGSASG KANGETKSVN SRGIPSGSDL
501: VGGIAASSVP GLSPSSSVCS LSSEKSTLNP NAKEFKLNPN AKSFIPSPAR PPTPVSDGSF YFPTNVTTVP SMPGMPVGIG IGPTFAGPQP IIYNPQVAQM
601: PSQGYFHPNA PQYGQLLGHP RQSLYMPSYL PEMQYKGRDY

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.