CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021526.1-P	Field mustard	cytosol	85.13	87.52
CDY33254	Canola	extracellular	84.07	86.56
AT3G14010.5	Thale cress	nucleus, plastid	58.27	63.68
CDY26136	Canola	cytosol	43.55	54.05
CDY08218	Canola	cytosol	44.16	53.69
CDY51396	Canola	cytosol	44.61	49.41
CDY33083	Canola	nucleus	44.61	49.41
KRH23258	Soybean	cytosol	40.36	41.56
KRH10084	Soybean	nucleus	40.06	41.12
VIT_09s0002g01560.t01	Wine grape	nucleus	38.54	40.25
Solyc06g062860.2.1	Tomato	cytosol	36.87	39.0
TraesCS6A01G022300.1	Wheat	nucleus	32.63	38.95
KRH47566	Soybean	plastid	37.33	38.92
KRH06143	Soybean	cytosol, plastid	36.57	38.38
CDX82502	Canola	nucleus	59.64	38.3
Solyc03g121950.2.1	Tomato	plastid	36.12	37.6
PGSC0003DMT400012530	Potato	nucleus	11.23	36.63
TraesCS6B01G028800.1	Wheat	nucleus	32.78	36.49
TraesCS6D01G024600.2	Wheat	nucleus	32.32	36.22
OQU84946	Sorghum	nucleus	32.32	35.21
Os02t0480900-01	Rice	nucleus	31.11	34.69
CDX75744	Canola	golgi, plastid, vacuole	59.33	34.45
GSMUA_Achr6P06300_001	Banana	mitochondrion	33.23	33.69
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	32.47	33.23
GSMUA_Achr7P11380_001	Banana	mitochondrion	31.41	32.55
Zm00001d016496_P004	Maize	cytosol, plastid	32.02	32.31
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	30.96	32.13
CDX92787	Canola	cytosol, nucleus, plastid	9.86	24.25
CDY46672	Canola	nucleus	11.08	16.55
CDY29262	Canola	nucleus	11.08	15.63
CDX89288	Canola	nucleus	10.93	15.45
CDX92788	Canola	plastid	3.19	12.73

Protein Annotations

EnsemblPlants:CDY39090	EnsemblPlantsGene:GSBRNA2T00067244001	Gene3D:2.30.30.100	InterPro:Ataxin-2_C	InterPro:LsmAD_domain	InterPro:SM_dom_ATX
ncoils:Coil	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145	PFAM:PF14438
ProteinID:CDY39090	ProteinID:CDY39090.1	SEG:seg	SMART:SM01272	UniParc:UPI0004EDFD26	UniProt:A0A078HKW0
MapMan:35.1	:	:	:	:	:

Description

BnaA01g29660DBnaA01g29660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKW0]

Coordinates

chrLK032440:+:94291..98629

Molecular Weight (calculated)

72540.7 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.669

Length

659 amino acids

Sequence
(BLAST)

001: MSLLAPDLYS ILRDPSFLRV IGVDVVIQMV DLGFEAGMNM QPEGVLNKAK SIKSHPANAA SNGEAGSLKG DSRDGLVYLT TCKIGHLVEV HLKNGSVYSG
101: IFHAADVEKD FGIILKMASL IKDGGLRGHK ARSEFVRKPP SKTFIIPADE LVQVIAKDLS ISSDGMSNAV QSEKSGELLT DSSISKSFHT DQGRELKPWI
201: PDGDVPQGLD NVFDDPWKRG RGWDQFKVNE SLFGVKSTFD EEIYTTKLDR GIRTREMEER AQRIAREIEG ENTRDLHVAE ERGFQLNEKF DIDEESKYSA
301: VLPADAFDDS GFDEEDDELL DTCNDETFGG SSTSTVQKPV SSSGKGYGEL RDASQPSRNN TNVDQMCSIS DDHAQHLPSE QRSKDFTAPG SSISESQMGE
401: RRNKNNPEFS HSNRSAEESV SGHGDSKEGA KLGGGGTSAW KTVAEKERQV SEVSGKPKSE SFTGQSASRR SSESRPGPST SSRPGLSPSS SIGSLSSSEK
501: STLNPNAKEF KLNPNAKSFK PTAAARPQSP MADASFYYPA APAPVQQMPG MPLGYGIQPQ YPGQQQMIYY PGHQHPQAFY PPNAQPQFPQ QQQQMMMGRQ
601: PRPQMVYMPL LRTSRTIHII KDESDNPMVV MLSFCWEGCE RTNPLFWFTF SPFCFLSLP

Best Arabidopsis Sequence Match ( AT3G14010.4 )
(BLAST)

001: MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR
101: GHKSRSEFVR KPPSKTFIIP ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH GADLENVFDN PWNRKWNQFE
201: VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301: FGGSSTSDGQ KPASSGKGCE ELRGDSQSSR KNKNVDQSCS TSKQQSKDFP AAGSNISESQ LDEQRRKNNE EVSHNNRSAE ESTSGHGDIK EGAKSGGGAS
401: SVSKAVTERE REASQVSSKT KSESSFGQSA SRSSESRPGP STSSRPGLSP SSSIGSMASS EKSTLNPNAK EFKLNPKAKS FKPLQSAAAP PQSPIADASF
501: YYPGPSHVPV QQMPGMPPVN YGLPPYPGNQ PQMMYHPQAY YHPNGQPQV

Arabidopsis Description

CID4CTC-interacting domain 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLC0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.