Factsheet for Zm00001d016496_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d032249_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54170.1	Zm00001d032249_P002	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053245_P001	Maize	cytosol, mitochondrion, nucleus, plastid	68.91	70.87
TraesCS6D01G024600.2	Wheat	nucleus	59.57	66.16
TraesCS6B01G028800.1	Wheat	nucleus	59.72	65.88
Os02t0480900-01	Rice	nucleus	59.42	65.65
TraesCS6A01G022300.1	Wheat	nucleus	54.21	64.13
HORVU6Hr1G003890.1	Barley	mitochondrion, plastid	59.57	60.4
VIT_09s0002g01560.t01	Wine grape	nucleus	38.74	40.1
CDY26136	Canola	cytosol	32.31	39.74
CDY08218	Canola	cytosol	32.31	38.93
KRH23258	Soybean	cytosol	37.98	38.75
KRH10084	Soybean	nucleus	37.98	38.63
GSMUA_Achr6P06300_001	Banana	mitochondrion	38.13	38.31
Bra014367.1-P	Field mustard	cytosol	31.09	37.73
PGSC0003DMT400012530	Potato	nucleus	11.64	37.62
AT3G14010.5	Thale cress	nucleus, plastid	34.61	37.48
GSMUA_Achr7P11380_001	Banana	mitochondrion	36.45	37.42
Solyc03g121950.2.1	Tomato	plastid	36.14	37.28
KRH47566	Soybean	plastid	35.99	37.18
KRH06143	Soybean	cytosol, plastid	35.53	36.94
Solyc06g062860.2.1	Tomato	cytosol	35.22	36.92
AT1G54170.1	Thale cress	nucleus	32.77	36.46
CDY51396	Canola	cytosol	32.62	35.8
CDY33083	Canola	nucleus	32.31	35.46
Bra037969.1-P	Field mustard	cytosol	32.01	35.19
Bra021526.1-P	Field mustard	cytosol	33.54	34.17
CDY33254	Canola	extracellular	33.38	34.06
CDY39090	Canola	cytosol	32.31	32.02
Bra001533.1-P	Field mustard	nucleus	29.71	18.85
CDX82502	Canola	nucleus	29.4	18.71
CDX75744	Canola	golgi, plastid, vacuole	30.32	17.44
Zm00001d002243_P004	Maize	mitochondrion	11.94	17.18
Zm00001d026347_P008	Maize	cytosol, plasma membrane, plastid	9.65	14.86

Protein Annotations

EnsemblPlants:Zm00001d016496_P004	EnsemblPlants:Zm00001d016496_T004	EnsemblPlantsGene:Zm00001d016496	EntrezGene:100502245	Gene3D:2.30.30.100	InterPro:Ataxin-2_C
InterPro:LsmAD_domain	InterPro:SM_dom_ATX	PANTHER:PTHR12854	PANTHER:PTHR12854:SF7	PFAM:PF06741	PFAM:PF07145
PFAM:PF14438	ProteinID:AQK70951.1	SEG:seg	SMART:SM01272	UniParc:UPI00084522A4	UniProt:A0A1D6H885
MapMan:35.1	:	:	:	:	:

Description

Polyadenylate-binding protein-interacting protein 3

Coordinates

chr5:-:164787246..164801706

Molecular Weight (calculated)

72223.4 Da

IEP (calculated)

6.515

GRAVY (calculated)

-0.656

Length

653 amino acids

Sequence
(BLAST)

001: MMSHEQQIVP PSKGSVNGFP HRKLDKEGSG TQSRINLVRS SSGGFTNSEN GIKLGHGSHS RDRLIYVLTQ LIGHHVDVHV NNGSIISGIF HATNPDKDFG
101: VVLKMAQVIK DGSARGQRYP AVLVKKPETM IIPARELVQV FAKDIELGGE LPKVPGNDKR KDLLIDSAIT RYHYLEEREL ERWAPDGGDS ECIELEKYDR
201: KGNRSWDQFE TNAALFGVKS TFNEEIYTTK LERGPHMREL EKHASRIARE IEGEDTRDIH LAEERGLFLG DDLDHDEEIK YSAVRRDTDN SKYKPPFTKV
301: PSSTCHVDSF NRTVNIDPND SLACSSTMVQ TYNFFILMLL INYANAIFGS KTSAIFLVCF FDVQDKESSS HIFDDTDASA TIHTNSVSQP TSDYLSDRPL
401: SNDENRYKVL FTWTVQSSIM LDRKLNKESN ENMDNRKLQH EDNLPDGARP LISEALDGRS SSSHAYEPSF SGQGFKSPET PDSTVPVKHP SAMEPVTSSQ
501: RPGSSTSSTS ERIGANSAAG APGLSPSSSI GSLTAEKSTL NPNAKEFKLN PNAKSFTPSA SLRPPHPTSS DASYYYPNNM PAMPLGPGLP VGMGFPPAYG
601: AQPVMYNTQP GASPHGYMHP AGPQYGQQMT IGGQTRPVYY YAPEMQQYRG RNF

Best Arabidopsis Sequence Match ( AT1G54170.1 )
(BLAST)

001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY

Arabidopsis Description

CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.