Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra008613.1-P | |
| Bra023570.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G54170.1 | Bra008613.1-P | AT5G16560.1 | 21798944 |
| AT1G54170.1 | Bra023570.1-P | AT5G16560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51396 | Canola | cytosol | 90.4 | 90.25 |
| CDY33083 | Canola | nucleus | 89.23 | 89.08 |
| Bra014367.1-P | Field mustard | cytosol | 61.28 | 67.66 |
| AT1G54170.1 | Thale cress | nucleus | 60.44 | 61.16 |
| Bra021526.1-P | Field mustard | cytosol | 50.17 | 46.49 |
| VIT_09s0002g01560.t01 | Wine grape | nucleus | 40.91 | 38.51 |
| KRH10084 | Soybean | nucleus | 40.74 | 37.69 |
| KRH23258 | Soybean | cytosol | 40.24 | 37.34 |
| KRH47566 | Soybean | plastid | 39.73 | 37.34 |
| KRH06143 | Soybean | cytosol, plastid | 39.39 | 37.26 |
| Solyc06g062860.2.1 | Tomato | cytosol | 39.06 | 37.24 |
| Solyc03g121950.2.1 | Tomato | plastid | 39.06 | 36.65 |
| TraesCS6A01G022300.1 | Wheat | nucleus | 32.49 | 34.96 |
| OQU84946 | Sorghum | nucleus | 35.35 | 34.71 |
| TraesCS6B01G028800.1 | Wheat | nucleus | 34.18 | 34.29 |
| TraesCS6D01G024600.2 | Wheat | nucleus | 33.5 | 33.84 |
| Os02t0480900-01 | Rice | nucleus | 33.5 | 33.67 |
| GSMUA_Achr6P06300_001 | Banana | mitochondrion | 35.86 | 32.77 |
| Zm00001d016496_P004 | Maize | cytosol, plastid | 35.19 | 32.01 |
| GSMUA_Achr7P11380_001 | Banana | mitochondrion | 34.18 | 31.92 |
| Zm00001d053245_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 33.84 | 31.65 |
| HORVU6Hr1G003890.1 | Barley | mitochondrion, plastid | 34.01 | 31.37 |
| PGSC0003DMT400012530 | Potato | nucleus | 9.93 | 29.21 |
| Bra001533.1-P | Field mustard | nucleus | 43.43 | 25.07 |
| Bra026388.1-P | Field mustard | nucleus | 14.14 | 17.95 |
Protein Annotations
| EnsemblPlants:Bra037969.1 | EnsemblPlants:Bra037969.1-P | EnsemblPlantsGene:Bra037969 | Gene3D:2.30.30.100 | InterPro:Ataxin-2_C | InterPro:LsmAD_domain |
| InterPro:SM_dom_ATX | ncoils:Coil | PANTHER:PTHR12854 | PANTHER:PTHR12854:SF7 | PFAM:PF06741 | PFAM:PF07145 |
| PFAM:PF14438 | SEG:seg | SMART:SM01272 | UniParc:UPI000253E707 | UniProt:M4FA55 | MapMan:35.1 |
Description
AT1G54170 (E=4e-192) CID3 | CID3 (CTC-Interacting Domain 3)
Coordinates
chrA06:+:364897..368090
Molecular Weight (calculated)
65389.9 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.752
Length
594 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSQPLSNGY PYRRAEHEAG GINKAQQMKQ HTLKKNGGKA GSVDISSRDP FEYLAACHIG HHVEVHLKDG SVYGGVFHAA DVENSFGIVL KMASLIREGS
101: LPGMKASSSL VSKPPSKILI IPADEVVQVI AKDLPVYSNN ASNSAQCERP LELLTDSSIS QSTHVDLGRE LERWVPDEDV PDCSDLENVF DDSWKRGWNQ
201: FEVNKTLFGV TSTFDEELYT TKLERGPRAR ELEEQALRIA REIEGENTRD LHVAEERGIQ LSGKFDIDEE TKYSSVCPVN GFDDSGYEED EEEEILLNCR
301: NNLTFGDSTS SDGMKSASTG NGKGGGSLSS VGQSCSNSNM HARQPIFEQP SKVTRAPGNN NRNESQFGEQ RNIKSVEATH YRKPSMESVS GLEEYVQLSL
401: RMCIEDINED AATSDPWRAS DRQNSTDGKL LGRLSDRAKP ESSCWRPGSS ISRNPENSAT SSPTSRPMLS PSSSIGSYSS EKSTLNPNAK EFKPNPNAKS
501: FKPSPTATRP QSPVPEGSFY YPPLPPMPGI HIVYGMGAAF PGQHPVMYNN TPQQLGPNQT YYSPNSPQYP QQMMVGQQRP ALFMPPSPYQ PVYC
101: LPGMKASSSL VSKPPSKILI IPADEVVQVI AKDLPVYSNN ASNSAQCERP LELLTDSSIS QSTHVDLGRE LERWVPDEDV PDCSDLENVF DDSWKRGWNQ
201: FEVNKTLFGV TSTFDEELYT TKLERGPRAR ELEEQALRIA REIEGENTRD LHVAEERGIQ LSGKFDIDEE TKYSSVCPVN GFDDSGYEED EEEEILLNCR
301: NNLTFGDSTS SDGMKSASTG NGKGGGSLSS VGQSCSNSNM HARQPIFEQP SKVTRAPGNN NRNESQFGEQ RNIKSVEATH YRKPSMESVS GLEEYVQLSL
401: RMCIEDINED AATSDPWRAS DRQNSTDGKL LGRLSDRAKP ESSCWRPGSS ISRNPENSAT SSPTSRPMLS PSSSIGSYSS EKSTLNPNAK EFKPNPNAKS
501: FKPSPTATRP QSPVPEGSFY YPPLPPMPGI HIVYGMGAAF PGQHPVMYNN TPQQLGPNQT YYSPNSPQYP QQMMVGQQRP ALFMPPSPYQ PVYC
001: MKPVLHSGSS SNGFSHRRFE KEAWMNNAQP SVDNTENGWD AESVDTPSQK LLVYFTTCNI GHQVEVHLKN GSVYSGIFHA ANVEKDFGII LKMACLIRDS
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
101: RGTKSRTVSK PSSKLLKIPA DELVQVIAKD LPLSSDSVSD SVQCEKPLEL LTDSLISQFY NVDLERELKP WVPDEDVPDC SDLENVFDDP WKRGWNQFEV
201: NKTLFGVTST FDEELYTTKL ERGPGTRELE EQALRIAREI VGENTRDIHV AEERGLQLSG KFDIDEETKY SSVCATNRFD DTCYEDDEEE EEDILLDCCN
301: NLTFGDSSAS DGKEPASTGK FYEDSWGDSL HLRSNKMVDQ SWSNSNKHTR QLMSELPSKD FPVAGNNIRN ESQLGEQRKS KFLGASLFKK PSEESVSGFE
401: DAPPPVKPSF IDGRLGLLSD RAKSENSSGW PGSSISRNSE NSAASSASNL PILSPSSSGS LSSEKSTLNP NAKEFKLNPN AKSFKPSPSA TRPQSPQSPV
501: FDGSFYYPPV PPMPGLHIRY GTGAAFPGQQ HPMMYNNTTQ LSPNQTYYSP NSPQYPQPMM VTQQRPILFM PPTPYQPEMP YKGRDSY
Arabidopsis Description
CID3Polyadenylate-binding protein-interacting protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8L793]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.