Factsheet for Bra008613.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003340.1-P
Bra006236.1-P
Bra007398.1-P
Bra008782.1-P
Bra009783.1-P
Bra010714.1-P
Bra012987.1-P
Bra014569.1-P
Bra015573.1-P
Bra017007.1-P
Bra019468.1-P
Bra020466.1-P
Bra022254.1-P
Bra023448.1-P
Bra025910.1-P
Bra026347.1-P
Bra026382.1-P
Bra031570.1-P
Bra033597.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	Bra015573.1-P	AT1G07310.1	21798944
AT5G16560.1	Bra031570.1-P	AT1G07310.1	21798944
AT5G16560.1	Bra025910.1-P	AT1G18400.1	21798944
AT5G16560.1	Bra017007.1-P	AT2G19650.1	21798944
AT5G16560.1	Bra022254.1-P	AT3G17860.1	21798944
AT5G16560.1	Bra019468.1-P	AT3G44720.1	21798944
AT5G16560.1	Bra003340.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra007398.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra014569.1-P	AT3G58500.1	21798944
AT5G16560.1	Bra026382.1-P	AT4G27060.1	21798944
AT5G16560.1	Bra026347.1-P	AT4G27460.1	21798944
AT5G16560.1	Bra010714.1-P	AT4G39050.1	21798944
AT5G16560.1	Bra033597.1-P	AT4G39050.1	21798944
AT5G16560.1	Bra006236.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra008782.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra023448.1-P	AT5G14070.1	21798944
AT5G16560.1	Bra009783.1-P	AT5G24660.1	21798944
AT5G16560.1	Bra020466.1-P	AT5G24660.1	21798944
AT5G16560.1	Bra012987.1-P	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28659	Canola	nucleus	92.78	88.52
CDX69443	Canola	nucleus	94.16	69.72
CDY67252	Canola	nucleus	93.13	68.78
Bra023570.1-P	Field mustard	cytosol	82.47	60.3
AT5G16560.1	Thale cress	nucleus	80.41	58.06
Bra018498.1-P	Field mustard	mitochondrion	13.06	53.52
Bra021038.1-P	Field mustard	plastid	23.02	37.43
Solyc06g066340.2.1	Tomato	nucleus	31.62	31.62
Bra023254.1-P	Field mustard	nucleus	37.8	30.05
VIT_04s0043g00340.t01	Wine grape	nucleus	47.77	29.76
Bra033844.1-P	Field mustard	nucleus	38.49	28.57
Bra040176.1-P	Field mustard	nucleus	30.58	28.08
PGSC0003DMT400043200	Potato	nucleus	37.8	27.64
GSMUA_Achr4P04510_001	Banana	nucleus	35.05	27.2
Bra006360.1-P	Field mustard	nucleus	64.6	25.65
KRH39002	Soybean	nucleus	35.74	25.24
KRH48713	Soybean	nucleus	35.74	25.0
Os08t0426866-00	Rice	nucleus	39.86	24.79
KXG25180	Sorghum	nucleus	39.52	24.21
Zm00001d032249_P002	Maize	plastid	39.18	23.65
Bra026202.1-P	Field mustard	nucleus	15.12	22.0
Bra029503.1-P	Field mustard	mitochondrion	12.37	20.93
Bra026818.1-P	Field mustard	nucleus	14.78	17.92
Bra026618.1-P	Field mustard	nucleus	15.46	17.18
Bra024836.1-P	Field mustard	nucleus	14.09	15.83
Bra035311.1-P	Field mustard	nucleus	28.18	13.14
Bra005124.1-P	Field mustard	nucleus	15.12	13.06
Bra000180.1-P	Field mustard	nucleus	15.81	11.83
Bra004973.1-P	Field mustard	nucleus	16.15	11.55
Bra017425.1-P	Field mustard	nucleus	5.84	8.59
Bra000270.1-P	Field mustard	nucleus	6.87	6.94
Bra017021.1-P	Field mustard	nucleus	3.44	2.75

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra008613	EnsemblPlants:Bra008613.1	EnsemblPlants:Bra008613.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	UniProt:M4CWL6	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000254488D	SEG:seg

Description

AT5G16560 (E=3e-106) KAN, KAN1 | KAN (KANADI); transcription factor

Coordinates

chrA10:+:13091253..13096203

Molecular Weight (calculated)

32841.2 Da

IEP (calculated)

11.258

GRAVY (calculated)

-0.633

Length

291 amino acids

Sequence
(BLAST)

001: MEGVFLEKPK SNTTLPDLSL NISLPDITSK EHYRRPSQTD NNRSSNFELS LSHHHNPSSN PTTRIIHSPD PRNLNLPHHQ HYNNPILNGG SLHQRVNGSD
101: INSIHRPIRG IPVYQNRSFP FHQQTSLPSL GGGGDLDQIS ILNSSSGYNN AYRSLQSSPR LRGVPLHHHH HNHYGVVGST DSSSPHHHGM IRSRFLPKMP
201: TKRSMRAPRM RWRSSLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA HVKSHLQMYR TVKTTNKPAA SSVKRIEIVL LRVVLSGIIF F

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.